BAC Information

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BAC

Clone NameMSMg01-050B24
Chromosome11 (Build37)
Map Location 71,073,546 - 71,074,173
singlet/doubletsinglet
Overlap geneNlrp1c
Upstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050B24.T7 (MSMg01no050_b24.b1)MSMg01-050B24.TJ (MSMg01no050_b24.g1)
ACCAG279311AG279312
length1,1391,365
length of high quality
(start - end)		765 (51 - 815)---
definitionCHROMAT_FILE: MSMg01no050_b24.b1 PHD_FILE: MSMg01no050_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:00 2005CHROMAT_FILE: MSMg01no050_b24.g1 PHD_FILE: MSMg01no050_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGTTCTNNNNNGGGCAATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTACCTAGACCAGAAAAGGCACAACAGAGAGCTAACCAC
TGGCAGCTCAGCATGCTAAGGCTCACAAAGGGAGACCTGAGATAAGTTTT
CAAAAGCAATGAGCCCTGGAGAAGCTGACAGTGAGCATCTCCCATGCAGG
CTTGTTGAATGCGGCCTCACATCCACATACTGCTCACTCCTGGCCTCAGT
ACTCAGTGCCTGCTCCAGCCTGACTGAGCTAAACCTGCGGCTGAACTACC
TGGGTAACCGTGGTGTGAAGCTGCTGTGTGAGGGGCTCAGGAATCCTGCC
TGTAACCTCAGCACCCTGTGGTAAGCAAGCACTGCATTTCCTTTTTGGAC
ATAAGGAGAGGAAGGGACATAGGTGAGTTCCCAGATGACAAAACATAAAA
AAGAAAAGGTATAGATGATTCATAGTTAACTTGGCTCCTGACCAGCTATA
CCACTAACACCCTGTTATTAGGCAAGTCACTGTCTTCTGGTAAACTCAGT
GTCCTCATGGATTAAATGGAATGTGATAGCCACCACATAAACATGTGATG
TATATTACACATACATGTGAAACAGCCTACAGTATACATATGTAAGAACA
AAGATAATATTAGGTAAGTACATGGGATTGGTGGAATCACATGCATTGAC
ATGACTATATATAGTAAGGGATTCTCAAGCTTGCCTTTTTCCAGAAGAGT
GCCTCAATCATTTATTCATTTATTCATTCATTAATTCATTTACGTATGTA
TTTATAGCAAGCACTCTGTATGTCAAGCACTGGTAAAAACCTTAGGAAAA
TAAACCACAAGACACATGGTTCTGTCCTCTGAGTTATGGGGAAAGAGACA
AATATTGATCACCCATCCGCCTGTGACTCTGTACAAATTTGCTGAATACT
GTTCAGGCCACAATAATTATGAAAGCCTCTTTTCTGTGAGAGGCATAATT
TTACTGAATGGGCCCCAGAAGGGTCCCCTGAAGCCCCGTAAGGAAAAAAA
AGCCCCTGGGTTCCCCCCAACATGAAAACCCAGCCGTCCCCAGGTTTTTG
GTCTAAATTTGGGGGAAAAATTCCCGTAAACAAAAAAAG

TTTTAGAACATGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGAGGTGAATTGGAATCTTTCTTCT
TGTTGCCAAGCCCTCAGGCCTGCTAAGGAAGAAAAGATATCAACAACCAT
CTGACCCAGCTGTGGTCCTTGGGGATCATCACCCCACCTGCCCAAGGGGG
CCCCTCCGCTGCAAAGGGGCCCCCCCCTGGTGGAAACCGGAACTAAGCTC
CCCGGATCCCCCCCCCCAAAGGAAAAACCCCCCCCCCTGGGGAAAACCAA
AAAAACCCCCCCGGGTTGGGAAAAATTTTAAATTCTTGGAAAAACTTTTT
TATAATCTTCTCTCCNNNNCNCTTTTATTTGTGTCTTTGTTTTTTTTTTT
TCTTTTTTTTTNNTGNGGTCCCNNNNNNNNNNNGGGGGGGGGGGCGAACA
ATATTGTTGTGGGGGGGGGGGGGAAAAAAAAAAAGGGGGGGGACCCCCCC
CCCCCTCACTCTTTTACACCCNCCCCCCCCCTTATCCCTCCCGNGGGGAC
CCAAAAAAAAAAAAANAACAATCNTCCNNNNNGCTCCCCNNNNNTTTTTT
TTTTTTTNTCCCNCCCCNNNTCCCCTCCCCNNNNNNNNNNNNNNNCNNNN
NNCNNNNNNNNNCCCATCCCNTTAATCAAAAAAAAAAANNNCNTCNNTNN
TTCTNCCTCCCCCNNNCNCANAAANACACCTTCTCCCCNTNANTTAATGA
ATTTTTNTTTTCCATTGTTTAGTTAAAGCNNNCCGGNNNNNNNNNNNNNN
NNNTCTANNTTCTNNNNNNCNNNNCCCTTNNNTTTCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNTNCNNCCNNNNCNNNNNNNNNNNNNNNTTNTNNTTT
TTTTATTTTTCTTTCTTTTNTTTTTTNNNNTCTTNNTNTTNNNTTTTTTT
TTNNTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTCTTTTCCTCCTCNC
CTCTCNNNNTCTTATAAACAATCATACCCCANNNNNNNNNNNCCCCCCCC
TTCCCNCNNNNNNNNNNNNNTNTNNNNNNCNNNNNNNNNNNNNNNNNNTN
NNNNTNNNNNNTNTTTTTTNTTTTTNTTTCTTTTNTTTTTTNTTTTTTTT
NTTTNTTTTTCCANAATTATTTTTCCTTNTTNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTNNNNNTNTNTNTTTNNTTTTNTTNNTTTTTTTTTTTTTTT
TTTTTTNNTTTTNTTTTTTTNNNTTTTNTTTNTTTTTNTTNNTTTTNTTT
TTTTTTTTTTTTTNTTTTNTTNTNNTTTTTCCCTTCCTTTNTTNTTTTNT
NTNNTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_b24.b1 MSMg01no050_b24.b1 CHROMAT_FILE:
MSMg01no050_b24.b1 PHD_FILE: MSMg01no050_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:00 2005
         (765 letters)



>mm_chr11_71073546_71074710
          Length = 1165

 Score = 1183 bits (612), Expect = 0.0
 Identities = 624/628 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctacctagaccagaaaaggcacaacagagagctaaccactggcagctcagca 63
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 628 ggaattctctacctagaccagaaaaggcacaacaaagacctaaccactggcagctcagca 569

                                                                       
Query: 64  tgctaaggctcacaaagggagacctgagataagttttcaaaagcaatgagccctggagaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgctaaggctcacaaagggagacctgagataagttttcaaaagcaatgagccctggagaa 509

                                                                       
Query: 124 gctgacagtgagcatctcccatgcaggcttgttgaatgcggcctcacatccacatactgc 183
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgacagtgaccatttcccatgcaggcttgttgaatgcggcctcacatccacatactgc 449

                                                                       
Query: 184 tcactcctggcctcagtactcagtgcctgctccagcctgactgagctaaacctgcggctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcactcctggcctcagtactcagtgcctgctccagcctgactgagctaaacctgcggctg 389

                                                                       
Query: 244 aactacctgggtaaccgtggtgtgaagctgctgtgtgaggggctcaggaatcctgcctgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aactacctgggtaaccgtggtgtgaagctgctgtgtgaggggctcaggaatcctgcctgt 329

                                                                       
Query: 304 aacctcagcaccctgtggtaagcaagcactgcatttcctttttggacataaggagaggaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aacctcagcaccctgtggtaagcaagcactgcatttcctttttggacataaggagaggaa 269

                                                                       
Query: 364 gggacataggtgagttcccagatgacaaaacataaaaaagaaaaggtatagatgattcat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gggacataggtgagttcccagatgacaaaacataaaaaagaaaaggtatagatgattcat 209

                                                                       
Query: 424 agttaacttggctcctgaccagctataccactaacaccctgttattaggcaagtcactgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 agttaacttggctcctgaccagctataccactaacaccctgttattaggcaagtcactgt 149

                                                                       
Query: 484 cttctggtaaactcagtgtcctcatggattaaatggaatgtgatagccaccacataaaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cttctggtaaactcagtgtcctcatggattaaatggaatgtgatagccaccacataaaca 89

                                                                       
Query: 544 tgtgatgtatattacacatacatgtgaaacagcctacagtatacatatgtaagaacaaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tgtgatgtatattacacatacatgtgaaacagcctacagtatacatatgtaagaacaaag 29

                                       
Query: 604 ataatattaggtaagtacatgggattgg 631
           ||||||||||||||||||||||||||||
Sbjct: 28  ataatattaggtaagtacatgggattgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space:   872025
Effective search space used:   872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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