BAC Information

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BAC

Clone NameMSMg01-050C04
Chromosome11 (Build37)
Map Location 26,483,486 - 26,484,080
singlet/doubletsinglet
Overlap geneVrk2
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl
Downstream geneEG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050C04.T7 (MSMg01no050_c04.b1)MSMg01-050C04.TJ (MSMg01no050_c04.g1)
ACCAG279319AG279320
length1,2031,245
length of high quality
(start - end)
630 (74 - 703)594 (119 - 712)
definitionCHROMAT_FILE: MSMg01no050_c04.b1 PHD_FILE: MSMg01no050_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:02 2005CHROMAT_FILE: MSMg01no050_c04.g1 PHD_FILE: MSMg01no050_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTGGGCGCTATCGACTCCTAAGGGAGAGGATCCGCGGAATTCTTTGT
TAACTCTGAGCCCCTTTTTTTAATGGTGTTGTTTGATTTTCTGGAGTCCA
CCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATT
GACAGTGTCTGTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCTATT
TGTCAATTCTTGATCTTATAGCACAAACCGTTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCCTATCTTTGAGGCTTTTCCCCACTTTATCCTCTAT
AAGTTTCACTGTCACTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGGTAGGAATGGATCAATTCGCATTCTTCCACAT
GATAACCTCCAGTTGTGCAAACACTATTTGTTGAAAATGCTGTCTCTTTT
CCACTGGACGGTTTTAGCTCCCTTATCAAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTCGCCTACTTGTCTG
TCACTATACCAGTACCATGCACCTTTTATCACAATTGCTCTGTAGTACAG
CTTGAGGTCAGGCATGGTATTTCCACCAGAGTTTATTTTATCCTTGAGAA
GAGTTTTGGCTATCCTAGGCTTTTTTGTTATTCCAGCTGCATTTGCAGAT
TGCCCTTTCCTATTCATTGACGAATTGAGTTGGAATTTTGATGGCGATTG
CATTGAATCTGTATATTGCTTTTGGCAAGATATCCATTTTTACAATATTA
CTCCCTACCATTCCTTGAACATGGGAAATTTTTTCTCTCTTCTGAGATCT
TCTTTAATTTCCTTTCTTCCGAGAACCTGCAGTTTCTTTATCATACAGAC
AATTTTCCTTTCCCTTAGTTTATAATCCTCCCCCAGGGTATTTTTATATT
ACTTTGGTGAATAATTGCTTAGGGTGCTGTTTGTTTTCCCTCCATTTTTC
TATTTCTCACATTCGGTTATAACTCTCTTTTGTTACATCCAACGCCCTCA
TTGCTCTCTTTTCTTTAACTCTATATTTTTTTATTCCTCTCTATCTTCTT
CCTCTCTTCTTTCTTCTTTTTCCACTCAATTTTTTTCATACTCTTCCTTT
CTT
NTTTACATGGTAGCTGGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCTTTTACCCAAGTCTGTGAGGTATCTGATTGAGGG
ATTTCTGTTCAGTCCGAAGCTTATGTTACAGTTTCCAAGCATAGGTACTT
TGTATTTGAGAATCAGAATTTTCTAACTGTATAATTAGTCACGAGGTTTA
ATGTACATTTTTTTCATCTCAAGCTGACAATGGCTTCAAAAAGACAGCAG
TGCCCTGGGGGAGCAAGAAAAGAAGGCCAAAGTTGACACACACAGAGGCA
AAACAGTGGAGGAAAACCAACACGAGTTGTGAAGTCAGGCATTGGAAATA
TGTCAGTGTTCAGGAGACTGCCTTTAATTTGCAATCCAAGTGAAATAGAG
TATTTAAATACGAGAGGCAGTATTATTGAGCCCAGCATGCCTGCTACCAC
TTGTTTGACTAGCTCAGAATAGAACACTGAGAGGCAAGGGCTCACAGTTA
AATGAACATTTATACATTTTAAAATCAAATGAAACCTTCAGAGTATATTC
ATGAATTAATTTTTTCCAGAATCCTAAATTTAATCAGCTGGAATTACTTT
TAAAGTGCCATTCTATTTAACTTTGGGGAATGATGAATTTGCCTTTTAGC
AGGAATGCTGTATTTTATCATGAAGACGAAACAAACTGTCTTTTGTTAAT
TATTCCCCAGAGACACTGGCCATTTTTCTCTCCTATGCTAAGTGTCGAGT
AAAGGCAGTGCCTGCATATTCATTTCAAACAAGACCAGTCCGGAAGCTTC
AACATGTGTGAGAGGCCCTACAAGAATGTAACTTCCCTTTTCAAGCACTC
TGGGGTGCCCCTTCTAATTGAAACTTTGCGAAAGGACTTGCCCCCACCCG
CCTTACTAAAGGGAACCTTGGGACCCCGACTAAAATTCATTGCTATAGAA
ATAAATGAAGAACAAATGGATGGTGTTCCCCTTGGGTTCCTGAATAATTT
AAAAATATTCCCCTTTTTTGCCCTGGTTGGCGAAAACTCCCCCCCTTAAA
CTCTCCTAGAAAATCTTTTTTTTTTTTGGGTGTGGGTGCCCAAAAATGTC
TTGGGACCTTAAAGTGGGCTCTTTGTGTGGGCCACATTTTATTTCCCTCT
TCAAAACCTCCTCTCTGGTCAAACCTCTGNTGCTGGAAAGCCGATAATAT
TTTTTGCACTCCCTCTTATATATATGGCCTATTGGTCGCTTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_c04.g1 MSMg01no050_c04.g1 CHROMAT_FILE:
MSMg01no050_c04.g1 PHD_FILE: MSMg01no050_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:02 2005
         (594 letters)



>mm_chr11_26483286_26484280
          Length = 995

 Score = 1096 bits (567), Expect = 0.0
 Identities = 588/595 (98%), Gaps = 1/595 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttatgttacagtttccaagcataggtactttgtatttgagaatcagaattttctaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gcttatgttacagtttccaagcataggtactttgtatttgagaatcagaattttctaact 736

                                                                       
Query: 61  gtataattagtcacgaggtttaatgtacatttttttcatctcaagctgacaatggcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtataattagtcacgaggtttaatgtacatttttttcatctcaagctgacaatggcttca 676

                                                                       
Query: 121 aaaagacagcagtgccctgggggagcaagaaaagaaggccaaagttgacacacacagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaaagacagcagtgccctgggggagcaagaaaagaaggccaaagttgacacacacagagg 616

                                                                       
Query: 181 caaaacagtggaggaaaaccaacacgagttgtgaagtcaggcattggaaatatgtcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caaaacagtggaggaaaaccaacacgagttgtgaagtcaggcattggaaatatgtcagtg 556

                                                                       
Query: 241 ttcaggagactgcctttaatttgcaatccaagtgaaatagagtatttaaatacgagaggc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttcaggagactgtctttaatttgcaatccaagtgaaatagagtatttaaatacgagaggc 496

                                                                       
Query: 301 agtattattgagcccagcatgcctgctaccacttgtttgactagctcagaatagaacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtattattgagcccagcatgcctgctaccacttgtttgactagctcagaatagaacact 436

                                                                       
Query: 361 gagaggcaagggctcacagttaaatgaacatttatacattttaaaatcaaatgaaacctt 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 435 gagaggcaagggctcaaagttaaatgaacatttatacattttaaaatcaaatgaaagatt 376

                                                                       
Query: 421 cagagtatattcatgaattaa-ttttttccagaatcctaaatttaatcagctggaattac 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagagtatattcatgaattaatttttttccagaatcctaaatttaatcagctggaattac 316

                                                                       
Query: 480 ttttaaagtgccattctatttaactttggggaatgatgaatttgccttttagcaggaatg 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 315 ttttaaagtgccattctatttaactttggggaatgatgaatttgccttttagtaggaatg 256

                                                                  
Query: 540 ctgtattttatcatgaagacgaaacaaactgtcttttgttaattattccccagag 594
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgtattttatcatgaagatgaaacaaactgtcttttgttaattattccccagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space:   575240
Effective search space used:   575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)