CTATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTT
CTCTCTATATACCCTTTATATTCTATAAGCTTTGCTACTCTTTAGTATTC
CAACCTAAAAGAACAAAAAAGATTTTGGTACAACAAATGGTTCTAGGGCA
ACAGAAAGCATTGCTCTAGATCATATAGCTCTAGGGAGTCTTTTAACATA
AGATAAAGCCATTTGCAAAGGAAAGTCCAAAATTCAAAATAACACATCTT
TCCCCTTAAGGCTACTATGTAGGTTTTTGCTTAATAATTAGAAGAAATAT
CCTTAATAATATAAAAAATAAATACATGTCACTCTTGAATTTACATAAAA
AGAAAGAAGGATGCAGGTATCTTTATCTATATAGATACTAGTCGCCAAAT
AAAGGAGAAAAATGGAAAAAGATATAAATGTTTTCAAGGGTGTTTAAATA
ATGAATAAATAAATCCAGGCCTTTGATCTTGATTCTTTGGAGACAAAGGC
AAGGACCTACAGATCCTTTGTGACTTCAAGGCTAGCCTAATCCACTAAGC
AAGTCCAGGTGAGCCTGGGCTATATAGAGATACTCTAACTCCAAATCATA
ATAATTGTTTTAAATTTTTAAAATGAATGTAGTTATAAGTTCAGCGGTTG
CGATGGTTTTACAAATCCTCCATGCGAGAGGTTAAAATAGAGCAGACCTA
ACTAAAAAAAAATTGGATCAGTGTGTACTCTTAATAACTTCAAGTTGATG
ATTCAAAAGCATGCTGAGAGTGAGGCTCCGTATTTGTGTTAACAGAAAAG
AAGATCTTTGGGGCTGACGAGATGGCTTCCCCTGTAAGAGTACTGGCTGC
TCCCTCCAGAGGTCCCTGAGTTCAATTTCCTATAAACCACCTGGTGCGTT
TACTACCCTTCTGTAATGAAAATCTGACTTCCCTCTCGGGGGTGTCTTGG
AAAAACCGCATCATTACTTCCCTTTCCTTAAAATTAACTAATTTTTTTTC
TTAATCTATACGAAATCATAAGGGTTTTTTGCAACTCCCTTTCTAAATTA
TTATGGTTTCCAATCTTCCCTGGGATTTAAATCACCCCCAAAAAAAACCT
CCCTCCTCTCCAAACGGGGAAAAAAATTATTACAAGGGGCCCTACCTTCC
ACCTGGGTATAAGGGCAATAATTTTCTAAAATCTCTCTCTGAATTTACAC
AC

TTTTTACACGAGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTATAAAATGCTATGTAGAAGATATATAGAA
AGTTATTAGCTCTGTCAGGGATAGTCATATTCATTTTCCCTGTGTGTATA
TGTCTATGTATATATATGTGTGTAGCTAAAAGACACCAGCAAATCAGCAG
TGATATCTTCTAATCATTTAATAAGGTCTTGAAATTTCAGTTTTCTCACA
TCCCAATAATTTCTTCAGCATTTTAAATGAATTCAAATTCATCAATTACA
AAAAAATTAAATAAACTTAAATTTATCTAATTTTTAAAATTATTATTTTA
TATTTGAGGGTCTTTGGCCTGTATGTATATTTGTGTACTAGGTTGGCACA
GTCTATTACTGGGGTTAGCTCTACTGACCTGACACACCAGTACTTTGTGA
GCCACCATGCGGGTAGTGAGAATTGAACCCAAGTACTCTGGAAGAGTACT
GAATACTGTTAACTGCTAAGCCATTTCTCTGGCCTTTATAATTAATTAAG
GTTTATCATTCATAATTATAATACAACTTACAAATAGAGGTAGTTTTCAG
AAATAAATATTTAAATTCTTGTTCCTAGGGATTGTATTGAGTGACCAGGA
TCATTACTGAGGACATTTTTTTTTCAGCTTAATTTGTGAATATAGTATTA
AGATTTTACTACATATCAAGATTTACTTTTGGGTTGAAATTGTAACTCCT
TGTAGCCCCTCATAGACCTCCCATCCATCTCTAACATTTGGGAAAAAATT
ACTGTTTGTATTTGTCACTATTTTAATTTATTTTTATCTGAAACTTCAAA
CCTCAAACAAAATTTCCAGTGAATTAAGGTTCTGGCAGTTTCTTTAAAAG
CCAAAATTTACACTTTTGGAACCACAAGGGATTTTACCTCTCCACCTTAT
ACATTTTGTTTTGGCAAATTATTTCACTTTATTTAAATTTTTTGGAAATG
GAACTTGGGGCTTATAGAAAATTACCCTTTATTTTTTTTACTAAGTGGAA
ATATTGGTTGTATTATGTAAACCCTCTTGGAACTTTTTAAATTTTCTTGA
ATAAATTATATTTAATTTTTATTAATACTGACAAAAATTATTTTCTTCCC
TTATAACAAATAAATTCTCCCCACTCTTTCTACACCTCTAATATAAAATT
GTGCTATAATAGAGTCTCCTATAGAGGGTTATATTTCTCAAATCTCCCAC
TATTCTCTCCTCTTAATTTATG

Query= MSMg01no050_e03.b1 MSMg01no050_e03.b1 CHROMAT_FILE:
MSMg01no050_e03.b1 PHD_FILE: MSMg01no050_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:19 2005
         (559 letters)



>mm_chr11_38765350_38766308
          Length = 959

 Score = 1011 bits (523), Expect = 0.0
 Identities = 550/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagattttggtacaacaaatggttctagggcaacagaaagcattgctctagatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagattttggtacaacaaatggttctagggcaacagaaagcattgctctagatcata 260

                                                                       
Query: 61  tagctctagggagtcttttaacataagataaagccatttgcaaaggaaagtccaaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctctagggagtcttttaacataagataaagccatttgcaaaggaaagtccaaaattc 320

                                                                       
Query: 121 aaaataacacatctttccccttaaggctactatgtaggtttttgcttaataattagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaataacacatctttccccttaaggctactatgtaggtttttgcttaataattagaaga 380

                                                                       
Query: 181 aatatccttaataatataaaaaataaatacatgtcactcttgaatttacataaaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatccttaataatataaaaaataaatacatgtcactcttgaatttacataaaaagaaa 440

                                                                       
Query: 241 gaaggatgcaggtatctttatctatatagatactagtcgccaaataaaggagaaaaatgg 300
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 441 gaaggatgcaggtatctttatctatatagatattagtcgccaaagaaaggagaaaaatgg 500

                                                                       
Query: 301 aaaaagatataaatgttttcaagggtgtttaaataatgaataaataaatccaggcctttg 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaatatataaatgttttcaagggtgtttaaataatgaataaataaatccaggcctttg 560

                                                                       
Query: 361 atcttgattctttggagacaaaggcaaggacctacagatcctttgtgacttcaaggctag 420
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 561 atcttgattctttggagacaaaggcaaggacatacagatcctttgtgaattcaaggctag 620

                                                                       
Query: 421 cctaatccactaagcaagtccaggtgagcctgggctatatagagatactctaactccaaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cctaatccactaagcaagtccaggtgagcctgggctatatagagatactctaactctaaa 680

                                                                       
Query: 481 tcataataattgttttaaatttttaaaatgaatgtagttataagttcagcggttgcgatg 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct: 681 tcataataattgttttaaattattaaaatgaatgtagttataagttcagtggttgtgatg 740

                              
Query: 541 gttttacaaatcctccatg 559
           |||||||||||||||||||
Sbjct: 741 gttttacaaatcctccatg 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no050_e03.g1 MSMg01no050_e03.g1 CHROMAT_FILE:
MSMg01no050_e03.g1 PHD_FILE: MSMg01no050_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:19 2005
         (588 letters)



>mm_chr11_38916070_38917057
          Length = 988

 Score =  783 bits (405), Expect = 0.0
 Identities = 423/429 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcatattcattttccctgtgtgtatatgtctatgtatatatatgtgtgtagctaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 429 agtcatattcattttccctgtgtgtatatgtctatgtatatatgtgtgtgtagctaaaag 370

                                                                       
Query: 61  acaccagcaaatcagcagtgatatcttctaatcatttaataaggtcttgaaatttcagtt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 369 acaccagcaaatcagcagtgatatcttctaatcatttaataaggacttgaaatttcagtt 310

                                                                       
Query: 121 ttctcacatcccaataatttcttcagcattttaaatgaattcaaattcatcaattacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttctcacatcccaataatttcttcagcattttaaatgaattcaaattcatcaattacaaa 250

                                                                       
Query: 181 aaaattaaataaacttaaatttatctaatttttaaaattattattttatatttgagggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaattaaataaacttaaatttatctaatttttaaaattattattttatatttgagggtc 190

                                                                       
Query: 241 tttggcctgtatgtatatttgtgtactaggttggcacagtctattactggggttagctct 300
           |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||
Sbjct: 189 tttggcctgtatgtatatttgtgtactaggttggcatagtctagaactggggttagctct 130

                                                                       
Query: 301 actgacctgacacaccagtactttgtgagccaccatgcgggtagtgagaattgaacccaa 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 129 actgacctgacacaccagtactttgtgagccaccatgtgggtagtgagaattgaacccaa 70

                                                                       
Query: 361 gtactctggaagagtactgaatactgttaactgctaagccatttctctggcctttataat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gtactctggaagagtactgaatactgttaactgctaagccatttctctggcctttataat 10

                    
Query: 421 taattaagg 429
           |||||||||
Sbjct: 9   taattaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)