Query= MSMg01no050_k12.b1 MSMg01no050_k12.b1 CHROMAT_FILE:
MSMg01no050_k12.b1 PHD_FILE: MSMg01no050_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:15 2005
(218 letters)
>mm_chr11_56195241_56195856
Length = 616
Score = 362 bits (187), Expect = e-104
Identities = 209/217 (96%), Gaps = 4/217 (1%)
Strand = Plus / Plus
Query: 1 aatgccatagatggcatgtcctaagccacaatgctctgttctcagctgcctcaagaatgg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgccatagatgggatgtcctaagccacaatgctctgttctcagctgcctcaagaatgg 260
Query: 61 aattcaggcacagagatagacacaatggttgggccctggtaagaacactgtccttagctt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcaggcacagagatagacacaatggttgggccctggtaagaacactgtccttagctt 320
Query: 121 -aaagagggataggtttcactgtttggtttattttgttatgatttggtttattgtttttt 179
||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaa-agggctaggtttcattgtttggtttattttgttatgatttggtttattgtttttt 379
Query: 180 tttcccctttgccctcacatgtctcagagagaaagca 216
|| |||||||||||||||||||||||||||||||||
Sbjct: 380 tt--ccctttgccctcacatgtctcagagagaaagca 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 616
Length adjustment: 9
Effective length of query: 209
Effective length of database: 607
Effective search space: 126863
Effective search space used: 126863
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no050_k12.g1 MSMg01no050_k12.g1 CHROMAT_FILE:
MSMg01no050_k12.g1 PHD_FILE: MSMg01no050_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:16 2005
(625 letters)
>mm_chr11_56410257_56411281
Length = 1025
Score = 1011 bits (523), Expect = 0.0
Identities = 601/631 (95%), Gaps = 12/631 (1%)
Strand = Plus / Minus
Query: 1 aaacagcatcaaaacctgaaggagagcacgt---cccctcaacttgcattagcacatctg 57
||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 825 aaacagcatcaaaacctgaaggagagcacgtagacc---cagcttgcattagcacatctg 769
Query: 58 catttggatcaacattttggttgggcaaggaaaatgtggtccatgccctacgttaggtat 117
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 768 catttggatcaacattttggttgggcaaggaaaatgtggtccatgccctaagttaggtat 709
Query: 118 tgagccttaaaatgaacaaaatattgatgtgtgctacatgaacggatatggggaacaata 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgagccttaaaatgaacaaaatattgatgtgtgctacatgaacggatatggggaacaata 649
Query: 178 aaacaattttgaaaggattgatgtttcagtactgtgattggctatcgcagtatggctaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaacaattttgaaaggattgatgtttcagtactgtgattggctatcgcagtatggctaga 589
Query: 238 gtgatcagttcataggactgaaacagagtaacagcaggggccagggaggctttgcttcag 297
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 588 gtgatcagttcataggactgaaacagagtaacagcaggggcctgggaggcattgcttcat 529
Query: 298 ggatgcatgtctgagtttggcaagaggatttgtttgggagatgtggtgatggcagctagg 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 528 ggatgcatgtctgagtttggcaagaggagttgtttgggagatgtggtgatggcagctagg 469
Query: 358 cagggtggctgtctttagttgccaacacattgtttccagtagtgagttctatgttgtatc 417
|||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 468 cagggtagctgtctttagttgccaacacactgtttccagtggtgagttctatgttgtatc 409
Query: 418 tattttaccacaatacaa-tgctcttaaaaagtagtaatatgctaactcattactcatat 476
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 408 tattttaccacaata-aactgctcttaaaaagtagtaatatgctaacttattactcatat 350
Query: 477 cttagtttaaattttataaagtaattattacctcataaaaataaagtacaatcatatgct 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttagtttaaattttataaagtaattattacctcataaaaataaagtacaatcatatgct 290
Query: 537 ttgtgtgttgtgtgtgcatg--cacgtgcacacatgcatgaacacacatgtgtattcttg 594
||||||||||||||||| | || ||||||||||||| |||||| |||||||||||||
Sbjct: 289 ttgtgtgttgtgtgtgc--gcccatgtgcacacatgcacaaacacatatgtgtattcttg 232
Query: 595 acattcttattgacacaggatctctcactga 625
||||| ||||||| ||||| |||||||||||
Sbjct: 231 acattgttattgagacagggtctctcactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
