BAC Information

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BAC

Clone NameMSMg01-050O01
Chromosome11 (Build37)
Map Location 16,876,694 - 16,877,464
singlet/doubletsinglet
Overlap genePlek
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik
Downstream gene1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O01.T7 (MSMg01no050_o01.b1)MSMg01-050O01.TJ (MSMg01no050_o01.g1)
ACCAG279819AG279820
length1,0801,114
length of high quality
(start - end)		777 (49 - 825)737 (77 - 813)
definitionCHROMAT_FILE: MSMg01no050_o01.b1 PHD_FILE: MSMg01no050_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:46 2005CHROMAT_FILE: MSMg01no050_o01.g1 PHD_FILE: MSMg01no050_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATANNNNNNNNACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGGTTGAACATTTCTACATAAAACTTGCTCAAGACCCCTT
GCCCTATAGTTACAGCATATTCAAAGCCCAGCTTACCTGACTTCTGAATC
TATATATGCTCTTAAGCTCACTGTCCTGTCATCGATATACTTAGCTCTTC
CCAGCTTTTGGTATCTATCTTGTTTCCATAGGAACCCTGGTAACTGTGTT
CTGGCTCCGTTCCTATCAGCTACAGCAGCATTTCCTGTTAGCACATAGCC
AGCCCTAACTCTGGGTTCTGAGTTTTCTGTGGCCTAAGGGAAACCTCTAT
GGTCAAATATAGCTAAGCAAAGGGCTCCACCCATGGGCACTGGCTTTGAG
GTTTTGGGGGATTTTACTTTGTGATATGTTCTTGCAAACATCTTTTTCCG
GGCTGATTAGGATGTATTTATACACACATACACTGGGTACTCTCGTGTCT
TAAATTTCCTTCTGTGGATGAGCAGCAAGAAGTTTTCACACATACACAGC
AACAATCTGCCACATGAATAAAACCCATGGCTTGTCAACAATCAGAAGAC
TTTCCCAAACATGTGTGATAAATCAATACATACAAATAACTAAATACATA
TGTGGAAATTCATCAGCCATTAGGGAAGTGCTAACTGAGTTCACAGCAAG
ACAGCATCATAGACTTGGGGGTTTGCACAAACCAACATAGAGTGGTATCC
TGAGTTTCGACGAGGGAATGCAACACCTGAGCCATTACAATGGTGCAGTT
CAATGTACTCTGACAAGTGCAGTGGTATAGCCCCCTTGAACATCAACCTA
TGGGAAGACTTAAAGCATTAAACGGATACTCTCTACTCCATTCCTTAATC
CCTATTACAAAGAAATAACAGCATATGTCCATACAGAAGTTTTATGAATG
TTCATCATTTGGAATTGTCAAGGAAATGACCCAGACATTTAAAAAGTATT
AGTATTAAAAAGCCAAACATCTGTATTTCTAAAAGGACATACTTTCCACC
ATAAAGGAGTGAACTCCTTTGTAGGTCCCC

NCAGTCTTTTNNAAAACAAGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGATCTTTCCAAGACTTTTA
TCATGAATGGGTGTTGGATCTTGTCGAATGTTTTGTCCCCATCTAACAAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTGTATATAATGGATTACTTT
GATGGATTTCCGTATATTAAACCATCCCTGCATCCTTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCG
AGAATTTTATTGAGTATTTTTGCATCGATATTCATAAGGGAAATTGGTCT
GAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGCTTAGGTATCAGAGTAA
TTGTGGCTTCCAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAA
ACTCATCTGGAATAATAAAAAACCTAAGATAGCAAAAACTCTTCTCAAGG
ATAAAAGACAAGTAGACCAATGGAATAGAATTGAAGACTCAGAAATGAAC
CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA
GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAAATGGTTGT
TATCATGTAGAAGAATGCAAATCGATCCATTCCTATCTCCTTGTACTAAG
GTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAA
ACTTATAGAGGAGAAAGTGGGAAAAAGCCTCGAAGATATGGGCATAGGGG
AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGGATT
GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAAACAC
CGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCT
ATCTTAAATCAAATAGGGGACTAATATCCCATTTTATATAAAGAACTTCC
GGAGGGTGGGACTTCCAAAAAATTCAAATAACCCCCCTTTAAAAAATGGG
GGGTTCAAAAGTTTAAACCAAAAAATTTCTCCCCCCAAGGAAATACCCCA
ATGGCTTTAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o01.b1 MSMg01no050_o01.b1 CHROMAT_FILE:
MSMg01no050_o01.b1 PHD_FILE: MSMg01no050_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:46 2005
         (777 letters)



>mm_chr11_16876490_16877664
          Length = 1175

 Score = 1429 bits (739), Expect = 0.0
 Identities = 764/773 (98%), Gaps = 2/773 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggttgaacatttctacataaaacttgctcaagaccccttgccctatagtta 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 975 gaattctttggttgaacatttctatataaaacttgctcaagaccccttgccctatagtta 916

                                                                       
Query: 65  cagcatattcaaagcccagcttacctgacttctgaatctatatatgctcttaagctcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 cagcatattcaaagcccagcttacctgacttctgaatctatatatgctcttaagctcact 856

                                                                       
Query: 125 gtcctgtcatcgatatacttagctcttcccagcttttggtatctatcttgtttccatagg 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gtcctgtcattgatatacttagctcttcccagcttttggtatctatcttgtttccatagg 796

                                                                       
Query: 185 aaccctggtaactgtgttctggctccgttcctatcagctacagcagcatttcctgttagc 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 795 aaccctggtaactgtgttctggctccgttcctatcagctacggcagcatttcctgttagc 736

                                                                       
Query: 245 acatagccagccctaactctgggttctgagttttctgtggcctaagggaaacctctatgg 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acatagccagccctaattctgggttctgagttttctgtggcctaagggaaacctctatgg 676

                                                                       
Query: 305 tcaaatatagctaagcaaagggctccacccatgggcactggctttgaggttttgggggat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcaaatatagctaagcaaagggctccacccatgggcactggctttgaggttttgggggat 616

                                                                       
Query: 365 tttactttgtgatatgttcttgcaaacatctttttccgggctgattaggatgtatttata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttactttgtgatatgttcttgcaaacatctttttccgggctgattaggatgtatttata 556

                                                                       
Query: 425 cacacatacactgggtactctcgtgtcttaaatttccttctgtggatgagcagcaagaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cacacatacactgggtactctcgtgtcttaaatttccttctgtggatgagcagcaagaag 496

                                                                       
Query: 485 ttttcacacatacacagcaacaatctgccacatgaataaaacccatggcttgtcaacaat 544
           ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct: 495 ttttcacacatacacagcaacaatctgc--catgagtaaaacccatggcttgtcaacaat 438

                                                                       
Query: 545 cagaagactttcccaaacatgtgtgataaatcaatacatacaaataactaaatacatatg 604
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagaagacgttcccaaacatgtgtgataaatcaatacatacaaataactaaatacatatg 378

                                                                       
Query: 605 tggaaattcatcagccattagggaagtgctaactgagttcacagcaagacagcatcatag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggaaattcatcagccattagggaagtgctaactgagttcacagcaagacagcatcatag 318

                                                                       
Query: 665 acttgggggtttgcacaaaccaacatagagtggtatcctgagtttcgacgagggaatgca 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acttgggggtttgcacaaaccaacatagagtggtatcctgagtttcgacgagggaatgca 258

                                                                
Query: 725 acacctgagccattacaatggtgcagttcaatgtactctgacaagtgcagtgg 777
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 acacctgagccattacaatggtgcagttcaatgtactctgaaaagtgcagtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1175
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1165
Effective search space:   893555
Effective search space used:   893555
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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