BAC Information

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BAC

Clone NameMSMg01-052G07
Chromosome11 (Build37)
Map Location 22,678,796 - 22,679,160
singlet/doubletsinglet
Overlap geneLOC100042846
Upstream geneAV249152, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827
Downstream geneLOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052G07.T7 (MSMg01no052_g07.b1)MSMg01-052G07.TJ (MSMg01no052_g07.g1)
ACCAG280892AG280893
length723714
length of high quality
(start - end)
471 (39 - 509)446 (68 - 513)
definitionCHROMAT_FILE: MSMg01no052_g07.b1 PHD_FILE: MSMg01no052_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:00 2005CHROMAT_FILE: MSMg01no052_g07.g1 PHD_FILE: MSMg01no052_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TACATGTCCTCAGACAATGAATCTTTACAGAAATCTGAAATAGATATTTT
TATCCATGAAACCATGAAATATCAAATAATCTAATTTTCTTCCTGCTCTT
CAGATTCTGAGAATATCCCAGCAAAGAACAAATCTTTACTGTTGTTTGGT
TGGTTTTTAATTTATGTATATGGGTGTTTTGCTTGCATGTAAGCCTGTAT
AGCATGTGTATGCCTGGTGCCTTTAGTGGTCAGGAGAAGGCTTTGAACTC
CCTAGAACTAAGTTACAGATGGTTGTGAACCTTTATGTAGGGTCTGGGAA
CTGAATTCTGACCCTCTGCAAGAGTAGCAACTGCTCTGAATTGCTGAGTC
ATCGCTCTAGCTCTTTGGTTTGTTGATTTTTGTTTTTGTTTTGCTGCTGT
TTGTTTGTTTTTAGTCCAGGCTGTCCTGGAGCCTGGAATCTACCGACCCC
TGCCTCCTGAGGTTATAGAAATGTGCCACCATGTCCAACTAGAACAAATC
TTTATTGTTCTCTAAAATTGAGATCAAGAAAGAGAAGAAAGAGAGCACGC
CCTATAAACTGAGAAAGACTAAATCCAAATATAGATGTGCAGGAGGACTG
GAAAGGATGAGAGAGAGAGTACGGGTAGAATGATGAAACACAGGTAAACT
AATGTCCATGAATTTCACACGTT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTACAGTGAGGCAGGCCTCAAATCCAATCAGG
AAGAAGTTACCCCTCAGCACACCAACCACTATTACACCAGTATGTTCTTC
TTGCCTAGCTGGTTGGTATTACTGCACACAGGGTCAACCTGCAGCTCTGC
AGCTGGAGAGATCATAGATCCTAGTGGAGAAGTTACTGCTTTTGTGCTGC
CAAATGAATATGATGTGCCTGTCTTCGTTAGGGTTTTACTGCTGTGAACA
GACACCATGACCAAGGCAACTCTTTTTTTTTTTTTTCTTTAATCCTTTCT
TACAGTCCAGATGTCATTCCCTTCATAGGCTGCCCCCAACCACTCCCCAT
TCTATACCTGGCTCCCATCCATGAGGATGTCTCCACCCCCACCCCTCCAT
CCCTCCCCATTCGCTGGGGCCTCCAGTCTCTTGAGGGTTAGTGAATCTTC
TCTCACTGAATGTAGTCCTCTGTGTATATGTGTTGGGAACCTCATATTAG
CTGGTGCATCCTGCCTGGTTGGTGGTCCAGTGTCTGATTTGGGGGGTCTA
GGTTATTTGGAGACTGTTCGTCTTCCCATGGGACTGCCCTCCTCCTCAGC
TTCCTTCTGGTTTTCCCCCATTCAACCACTGGGGCCCTGGCGCTTCTGTC
CATTGGTTCAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_g07.b1 MSMg01no052_g07.b1 CHROMAT_FILE:
MSMg01no052_g07.b1 PHD_FILE: MSMg01no052_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:00 2005
         (471 letters)



>mm_chr11_22678796_22679666
          Length = 871

 Score =  644 bits (333), Expect = 0.0
 Identities = 357/365 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttacatgtcctcagacaatgaatctttacagaaatctgaaatagatattttta 64
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 365 gaattctttacatgtgctcagacaatgaatctttacagaaatctgagatagatattttta 306

                                                                       
Query: 65  tccatgaaaccatgaaatatcaaataatctaattttcttcctgctcttcagattctgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tccatgaaaccatgaaatatcaaataatctaattttcttcctgctcttcagattctgaga 246

                                                                       
Query: 125 atatcccagcaaagaacaaatctttactgttgtttggttggtttttaatttatgtatatg 184
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atatcctagcaaagaacaaatttttactgttgtttggttggtttttaatttatgtatatg 186

                                                                       
Query: 185 ggtgttttgcttgcatgtaagcctgtatagcatgtgtatgcctggtgcctttagtggtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtgttttgcttgcatgtaagcctgtatagcatgtgtatgcctggtgcctttagtggtca 126

                                                                       
Query: 245 ggagaaggctttgaactccctagaactaagttacagatggttgtgaacctttatgtaggg 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggagaaggctttgaactccctaggactaagttacagatggttgtgaacctttatgtaggg 66

                                                                       
Query: 305 tctgggaactgaattctgaccctctgcaagagtagcaactgctctgaattgctgagtcat 364
            |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cctgggagctgaactctgaccctctgcaagagtagcaactgctctgaattgctgagtcat 6

                
Query: 365 cgctc 369
           |||||
Sbjct: 5   cgctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)