Query= MSMg01no052_k22.b1 MSMg01no052_k22.b1 CHROMAT_FILE:
MSMg01no052_k22.b1 PHD_FILE: MSMg01no052_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:22 2005
(169 letters)
>mm_chr11_112818353_112818919
Length = 567
Score = 315 bits (163), Expect = 7e-91
Identities = 167/169 (98%), Gaps = 2/169 (1%)
Strand = Plus / Plus
Query: 1 tcgatcccttgctccaggcctatctccacacagggccccagggaaatggccacttccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgatcccttgctccaggcctatctccacacagggccccagggaaatggccacttccaag 260
Query: 61 ttccatctagtgctgtcagagcctgggggcatcaccagggaacaggctttctgctgaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccatctagtgctgtcagagcctgggggcatcaccagggaacaggctttctgctgaggc 320
Query: 121 tttttttttttttttaattctcaaataccactccagctgtttcatgcaa 169
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttttt--aattctcaaataccactccagctgtttcatgcaa 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 567
Length adjustment: 8
Effective length of query: 161
Effective length of database: 559
Effective search space: 89999
Effective search space used: 89999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no052_k22.g1 MSMg01no052_k22.g1 CHROMAT_FILE:
MSMg01no052_k22.g1 PHD_FILE: MSMg01no052_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:22 2005
(620 letters)
>mm_chr11_112900116_112901136
Length = 1021
Score = 1091 bits (564), Expect = 0.0
Identities = 606/620 (97%), Gaps = 1/620 (0%)
Strand = Plus / Minus
Query: 1 tctgtgccaagggctctggctggactagggttgagctgcctgcaattgtgctggtcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tctgtgccaagggctctggctggactagggttgagctgcctgcaattgtgctggtcctgg 761
Query: 61 gaagcgagctcactaggttgccttatggactctgtgtctgtcttctggcctggacttcag 120
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 760 gaagcgagctcactaggtcgccttatggactctgcgtctgtcttctggcctggacttcag 701
Query: 121 agtgctgatgggcaaggcatttgtccctcattaaacttagaatgaatacagtggcaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 700 agtgctgatgggcaaggcatttgtccctcattaaacttagaatgaatacagcggcaaatg 641
Query: 181 ttagagagaccggaccacagttattctaaatcatagcctccactgctgccccagggtatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttagagagaccggaccacagttattctaaatcatagcctccactgctgccccagggtatg 581
Query: 241 gcgcctgcctactctcgcagggcaggtggcttcagcagacatgtcgagagaggtacgact 300
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 580 gcgcctgcttactctcgcggggcaggtggcttcagcagacatgttgagagaggtacgact 521
Query: 301 taaggtgtgtgtgtgtcgggggtggggtccacaggacttaagactacctgaacagagggc 360
|||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct: 520 taaggtgtgtgtgtatcgggggtgggttccacaggacttaagactatcagaacagagggc 461
Query: 361 agcaacagtctac-taactcccaagaaccagtggaatgtgaagaccccctccactgtaag 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcaacagtctacctaactcccaagaaccagtggaatgtgaagaccccctccactgtaag 401
Query: 420 gccctgcagctgtggggtgctctggtctcctgtggggtgcagtacttcagggtgcactgc 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 400 gccctgcagctgtggggtgctctggtctcctgtggggggcagtacttcagggtgcaccac 341
Query: 480 tctacatcagaccctcagtgctgctatccaggtctgccccaggaggctgtccaggaaagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctacatcagaccctcagtgctgctatccaggtctgccccaggaggctgtccaggaaagt 281
Query: 540 acgtcttatttctcagccccaggcatttacagtcctccacctatcgctcccacagcccac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acgtcttatttctcagccccaggcatttacagtcctccacctatcgctcccacagcccac 221
Query: 600 agttgggaatgttctggaac 619
||||||||||||||||||||
Sbjct: 220 agttgggaatgttctggaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
