BAC Information

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BAC

Clone NameMSMg01-053K07
Chromosome11 (Build37)
Map Location 41,940,466 - 41,940,679
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053K07.T7 (MSMg01no053_k07.b1)MSMg01-053K07.TJ (MSMg01no053_k07.g1)
ACCAG281803AG281804
length727718
length of high quality
(start - end)
270 (41 - 310)214 (70 - 283)
definitionCHROMAT_FILE: MSMg01no053_k07.b1 PHD_FILE: MSMg01no053_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:37 2005CHROMAT_FILE: MSMg01no053_k07.g1 PHD_FILE: MSMg01no053_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAAT
TCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTTGTTCTCTG
GAGTCTAACTTCTTGAGTTCTTTGATATATTATTCCTCTATCAGATATAG
GCTTGGTAAAGATTTTTTCCCACTTTGTTGGTTGCCATTTTACATGGAGG
GACCATGTCACCAGCTGCACATGCAGCAGAGGGTGGCCTTGTTGGAAATC
AATGGGAGGAGAGGCCCTTGTTCCTGAGAAGGTTCAATGCCACAGTGTAG
ATGAATACCATGACAGGTTAATAGCAGCTGGCGGGTTGATGAGGGAGAAT
GGGATGGTTTTTCCCCCCACTCCCTCTCTCTTCTCCTCCTTTTCTCTCTT
TCTCTTCTGTCCCCCCCCCCCTATTTTCCTCCTTTCTCCCTCTATTTATT
TCTTATTCTTTTCCTTTTCCCTTTTCCCTTCATTTCTCTCTTCTTTATTT
TCTCTTCTCTCCCTCTCCTTCCCCTACCCTAACATTTTTCCTCTCCTCTC
TATTACTTTTTTCTTTTTTTCCTCCCCATTTTTCCCTCCCTATTTCTCCT
TTCCACTGCTATACCCATTATTATATCTACTTTTCTATCTCTCACCTTTA
CTCTTTTCCTTCCGCCATTTTTTTCCTGCCTCTTCCCGTGCCTATTCTTG
CTTTTCCCCATTACTCCTCAACCTTTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAATTAGAGGTGAAC
TATAGAAGGTTCCACAAAATTCTCTGCCATGAACAGCAAAATGTATATGC
CTTCCCCCACAGATCTTCCCCATTCCTTCCCCCTTTCCTCATACACATGC
TTCAAGTTCTAAACTAAAACCAATGCGTGGGTAACATAATGCTGTTGATC
TCACCTGTGAATTGCTCAGTATCCCATTAGCCAGTAGTGTCTGGGAAAAT
ACAAATCATTATCTTCATCAGGAGTTACTGAATTGGAAACTGCAAGTTAT
ACAGGACATCAATTCTATTTATTTCCTTCTGGGCAGCTACCAATGTGATG
TCCACTTGTATATTACCTTCACGACCACCAACTGTGATAGCAGAGAATGG
GCCGTTGTCCTCGCTCTCCCTTTTATATTATTCATTATTTCTCTTCTCCC
ATTTTTCTCCCACCCCCCCATCCCATTTTTTTTTCTACATCCTTTTCAAT
TTAATCTATCCCTTTCAACCTTTTCATATTTCCCTTTTCTCTAATCAATT
ATCACATTTTTTTCCCATATATTCTTTTCCACCCTTTCTTTTTACCCCCC
ATCTCCCCCTTATCCCCTTTCCTCCCTTTCCCTTTTTTCCCTTTACCTTT
CATTCCTTTCTACTTTTCTTTTCCATCTTCCTTTTTTCCCTTCTCCTTTT
TTTTTTATTTTCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_k07.g1 MSMg01no053_k07.g1 CHROMAT_FILE:
MSMg01no053_k07.g1 PHD_FILE: MSMg01no053_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:37 2005
         (214 letters)



>mm_chr11_41940266_41940879
          Length = 614

 Score =  391 bits (202), Expect = e-113
 Identities = 211/214 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctgccatgaacagcaaaatgtatatgccttcccccacagatcttccccattccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgccatgaacagcaaaatgtatatgccttcccccacagatcttccccattccttc 260

                                                                       
Query: 61  cccctttcctcatacacatgcttcaagttctaaactaaaaccaatgcgtgggtaacataa 120
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 261 cccctttcctcatacacatgctttaagttctaaactaaaaccaatgagtgggtaacataa 320

                                                                       
Query: 121 tgctgttgatctcacctgtgaattgctcagtatcccattagccagtagtgtctgggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgttgatctcacctgtgaattgctcagtatcccattagccagtagtgtctgggaaaa 380

                                             
Query: 181 tacaaatcattatcttcatcaggagttactgaat 214
           |||||||||||| |||||||||||||||||||||
Sbjct: 381 tacaaatcattagcttcatcaggagttactgaat 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)