BAC Information

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BAC

Clone NameMSMg01-053M08
Chromosome11 (Build37)
Map Location 52,224,402 - 52,224,737
singlet/doubletsinglet
Overlap genenone
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik
Downstream geneLOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053M08.T7 (MSMg01no053_m08.b1)MSMg01-053M08.TJ (MSMg01no053_m08.g1)
ACCAG281896AG281897
length678691
length of high quality
(start - end)
439 (79 - 517)336 (79 - 414)
definitionCHROMAT_FILE: MSMg01no053_m08.b1 PHD_FILE: MSMg01no053_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:46 2005CHROMAT_FILE: MSMg01no053_m08.g1 PHD_FILE: MSMg01no053_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GAATTCCTGAAAACACCAACAAAGAACAAACAAAACAAAACAAAACAAAA
CAAAACAAAACAAAACAAAACCCCCAGCAAATAAAATCCATTGATTTTTC
CCTGTTTCAGAAACCATCGTTGCTAATAGTTCTTCAGTTTAAGGGTAGGA
TTTTGCTACTTCTTCCCTCCCCCGTGATGGGACTTTGGCTTGATCTTGTG
CATGTCCTATGCATGCCCTATATAGGCTGTCAAAACTACTGTGAGTCATA
TTTGCATCAGCCCTGCTCTGCCCAGGAAATGCTGTGTCTCTGTAGTTGTC
TATTGTCTCTGACTCTTAGAACCTTTCTCTCACTCCCTTAAGTGGTGATC
CCTGTGTCTTGGAAGGAGCAAGTGTGATACAGATATCCCTTTTGGGGCTG
AAGATGCTGGAGTCTCCTATTCTTTGCACCTTTGACCAGTTGTTGGTCTC
TATGTCAACTGCCATTTACTGAAGAAATGAATCTTTCCAAATGAAGGTTG
AGAGATGCACTAATCTATGGGTATAGATTAAGCCATAGAGGAGTTGATTT
AATGTTCTTTCCTTTTCCCTAATTACTGTAATAAGCAGCACTCCCCTTGG
ATACTGGTTTGTTGGTTCTTATAGTGGA
NNCCTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGTCCTGACACCCTTCTTG
CGGAGCTTTTTGTGCCACTCCCTGGTGCATAGGTGGATAGCTCTGGTACC
CGAGACTCCCTAGGGAGGTAGCACCCTGGGTAGAAGCTATTGTGTGCCTT
GGGCACAGACCTGGATTGGATTCCTTCTCTGGATCTGGCCTCTAGGCTGA
GTCCTATTTGTAGTCGAGGGGAGAAGTGAACACGTTTCATGTCTGTTTCT
TGGGGAAAAGAGAGGTATCTCAAGGGCTGGTTTAAATGTCCCATCCTTGC
TGGAGCCAGCGTAGTCCTGCTCTGTGCTGGTCTTAGTTCATCTGTGAGGA
ATTCTGACTGAGGAAGGAATGGAGGGAAGGGCAGAGTGTGGCACTGGGTG
GTCTTGAGCTGAGTTGTGTCTGTCAGCCTTGTACTTGGTGAGATTGGTAA
TTTGAGCAGTTCTGAGACCTTCCGGTAACAGGAAATGCATTAACCTTTCC
TAAAGGAAATTGTAGATGGAGAAGTTTTCTTTCCTCGCCTTTTGTTTCAC
TTATGGCCATCCCATTCCTTGGACTCACCTTCGTTCCCCTGTGTTTACTG
GTGTCCGGATATACAATGGTTTTTTACCCCTGTGTCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_m08.g1 MSMg01no053_m08.g1 CHROMAT_FILE:
MSMg01no053_m08.g1 PHD_FILE: MSMg01no053_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:47 2005
         (336 letters)



>mm_chr11_52224202_52224937
          Length = 736

 Score =  642 bits (332), Expect = 0.0
 Identities = 335/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggtcctgacacccttcttgcggagctttttgtgccactccctggtgcataggtggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggtcctgacacccttcttgcggagctttttgtgccactccctggtgcataggtggat 260

                                                                       
Query: 61  agctctggtacccgagactccctagggaggtagcaccctgggtagaagctattgtgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctctggtacccgagactccctagggaggtagcaccctgggtagaagctattgtgtgcc 320

                                                                       
Query: 121 ttgggcacagacctggattggattccttctctggatctggcctctaggctgagtcctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggcacagacctggattggattccttctctggatctggcctctaggctgagtcctatt 380

                                                                       
Query: 181 tgtagtcgaggggagaagtgaacacgtttcatgtctgtttcttggggaaaagagaggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagtcgaggggagaagtgaacacgtttcatgtctgtttcttggggaaaagagaggtat 440

                                                                       
Query: 241 ctcaagggctggtttaaatgtcccatccttgctggagccagcgtagtcctgctctgtgct 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ctcaagggctggtttaaatgtcccatccttgctggagccagtgtagtcctgctctgtgct 500

                                               
Query: 301 ggtcttagttcatctgtgaggaattctgactgagga 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcttagttcatctgtgaggaattctgactgagga 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)