BAC Information

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BAC

Clone NameMSMg01-054D23
Chromosome11 (Build37)
Map Location 120,040,102 - 120,040,572
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
Downstream gene2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054D23.T7 (MSMg01no054_d23.b1)MSMg01-054D23.TJ (MSMg01no054_d23.g1)
ACCAG282238AG282239
length663698
length of high quality
(start - end)
474 (42 - 515)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no054_d23.b1 PHD_FILE: MSMg01no054_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:23 2005CHROMAT_FILE: MSMg01no054_d23.g1 PHD_FILE: MSMg01no054_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTTCGAGAGGATCCGCGGAATTCAGTTCTGCTCCCCCCAGCTGTCA
CCTCGCAGTGGCCATAGCAACTATTTCCACGGCTGAGGTTTGGCTTGTTC
ATCATGAAACACAATGTCAGCAAAATGGACTGGTCAGCCCAAGTGGCTGC
TGGGTGAGCAGGAGCTCCCATACTTGGCCCAGCAGGCAGGTGCCAATGTG
TGGGGTGGCAGACAGGCTCTGGGACTTTGATGACTGGCAGTGTCTCCACC
TCTGTGTGCCTGGGGATACGGAGATGGAGGTGTAGGTGAGAGTTGTCCAC
ATCCTCTCCCCATGTCCCTATGCTTCATAGCAGGTAGACTTTGGGGGTAC
TGTCATCCTCAGGCATAGTATCTAGATTCCCGACATGAAAACTTTCCAAT
CTTTGAATTGGGAATAATTGTAATAAACAGATGGTCCCAGGCTAATGTTG
ATTTGACCTAAGAATTTTGTCTTCTGCTAGGCGGTGGTGGTGCACACCTT
TGATCCCAGCACTCAGGAGACAGAGGCACATGAGTCTCTCAGTTCGAGGC
CAGCCTGATCTCCAGAGTGAGTTCTAGGACAGCCAGGCTACCCAGAAAAA
TCCTGTCCCTAAAACTCGAATAGAATAAGAAAGAGGATTTTGCCTTCTTG
CCGGAGTGAAAGT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGGATGCCTGGGTGGCCTCAG
ACTCAGACATTCACCTGCCCCTGCCTACAAGTGTTGTGATTAAAGGCATG
TGTCACCACACCTAGCATGCCCCATAATAAATAAATGTTAAAACACCCAA
ATAGAGCCAGGCATGATGGCGCATGCCTTTAATCCCAGCACTCGGGAGGC
AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAAAAAGTGAG
TTTGAGGACAGCCAGAGCTACTCATATAAACCTGTCTGGAAAAGACAAAA
AAAAAAAAAAAAATAAGACTTAAAAAACCAAAACAAAACAAAAAACAAAA
AACACCCAAATAACAAAAGGCTGCCCAGCTACATCAGGGCACTGCTTCCA
CTTCTTTCTTTTTCATTATTAAATTGTTGAAACATTTATGTAGGCTGGAG
AGATGGCTCAAAATTTAAGAGCATTTGGTCTTGCAGAGGGTCTCAGTTGA
TTTCCCAGCACCCACATGGCAGCTCACACTGGCTGTAGCCCAATTCCAGG
GTCCCTGGCGCCCTCTTTTGACTTCCCCCAGGCTCCTACACCTGTATGGT
GCACCCACATAACATACATTCCGGTGCATACACATAAAATAATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_d23.b1 MSMg01no054_d23.b1 CHROMAT_FILE:
MSMg01no054_d23.b1 PHD_FILE: MSMg01no054_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:23 2005
         (474 letters)



>mm_chr11_120039899_120040772
          Length = 874

 Score =  880 bits (455), Expect = 0.0
 Identities = 467/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctgtcacctcgcagtggccatagcaactatttccacggctgaggtttggcttgttcatca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctgtcacctcgcagtggccatagcaactatttccacggctgaggtttggcttgttcatca 263

                                                                       
Query: 64  tgaaacacaatgtcagcaaaatggactggtcagcccaagtggctgctgggtgagcaggag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaaacacaatgtcagcaaaatggactggtcagcccaagtggctgctgggtgagcaggag 323

                                                                       
Query: 124 ctcccatacttggcccagcaggcaggtgccaatgtgtggggtggcagacaggctctggga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcccatacttggcccagcaggcaggtgccaatgtgtggggtggcagacaggctctggga 383

                                                                       
Query: 184 ctttgatgactggcagtgtctccacctctgtgtgcctggggatacggagatggaggtgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttgatgactggcagtgtctccacctctgtgtgcctggggatacggagatggaggtgta 443

                                                                       
Query: 244 ggtgagagttgtccacatcctctccccatgtccctatgcttcatagcaggtagactttgg 303
           ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 ggtgagagttacccacatcctctccccatgtccctatgcttcatagcaggcagactttgg 503

                                                                       
Query: 304 gggtactgtcatcctcaggcatagtatctagattcccgacatgaaaactttccaatcttt 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggtactgtcatcctcgggcatagtatctagattcccgacatgaaaactttccaatcttt 563

                                                                       
Query: 364 gaattgggaataattgtaataaacagatggtcccaggctaatgttgatttgacctaagaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattgggaataattgtaataaacagatggtcccaggctaatgttgatttgacctaagaa 623

                                                              
Query: 424 ttttgtcttctgctaggcggtggtggtgcacacctttgatcccagcactca 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttgtcttctgctaggcggtggtggtgcacacctttgatcccagcactca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)