Query= MSMg01no054_i12.b1 MSMg01no054_i12.b1 CHROMAT_FILE:
MSMg01no054_i12.b1 PHD_FILE: MSMg01no054_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:44 2005
(428 letters)
>mm_chr11_70709424_70710250
Length = 827
Score = 735 bits (380), Expect = 0.0
Identities = 416/438 (94%), Gaps = 21/438 (4%)
Strand = Plus / Plus
Query: 1 ccaatactctgattacaggttatttataataaaatatctaaaaaagatggcctggagaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccaatactctgattacaggttatttataataaaatatctaaaaaagatgggctggagaga 260
Query: 61 tggttcaggggttaagagcactgactgcttttccaaaggtcctgagttcaaatcccagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttcaggggttaagagcactgactgcttttccaaaggtcctgagttcaaatcccagca 320
Query: 121 actgcatggtggctcacaaccatctgtaatgag-atctgatgccctcttctggtgtgttt 179
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 321 actgcatggtggctcacaaccatctgtaat-aggatctgatgccctcttctggtgtgttt 379
Query: 180 ctgaaaacagctacagtgtacttatataaatataataaataaatctttaaaaaatatcta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgaaaacagctacagtgtacttatataaatataataaataaatctttaaaaaatatcta 439
Query: 240 aagatgtgtttt----aaaatcacaaaatacttatgatggtgtaaatattacatgtgctc 295
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagatgtg----ggggaaaatcacaaaatacttatgatggtgtaaatattacatgtgctc 495
Query: 296 ttttgctgttgtgagccagtgagttatattagggttgcttccaggaacaccccccg---- 351
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 496 ttttgctgttgtgagccagtgagttatattagggttgcttccaggaaca------ggggt 549
Query: 352 -atttggtagtggctgtaccactaaagaaaatgtcttttcctcttctaggaaccactgac 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gatttggtagtggctgtaccactaaagaaaatgtcttttcctcttctaggaaccactgac 609
Query: 411 tgctataaaccctcaggg 428
||||||||||||||||||
Sbjct: 610 tgctataaaccctcaggg 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space: 342742
Effective search space used: 342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_i12.g1 MSMg01no054_i12.g1 CHROMAT_FILE:
MSMg01no054_i12.g1 PHD_FILE: MSMg01no054_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:44 2005
(481 letters)
>mm_chr11_70795215_70796094
Length = 880
Score = 853 bits (441), Expect = 0.0
Identities = 466/481 (96%), Gaps = 12/481 (2%)
Strand = Plus / Minus
Query: 1 ttttgtttaatatgggaagtaatagtagtgagtccatgataagaaataaccatctcatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttttgtttaatatgggaagtaatagtagtgagtccatgataagaaataaccatctcatga 769
Query: 61 taaatatcagttcagctcagtaagtatatcctgctctttttatagagtgagaaacggacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 taaatatcagttcagctcagtaagtatatcctgctctttttatagagtgagaaacggacg 709
Query: 121 ttttaaggagtgatttgggctagcgtcgtagaacagccttaagaatggatacagtccggg 180
||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct: 708 ttttaaggagtgatttgggctagtgtcg-----------taagaatggatacagtcc-gg 661
Query: 181 tctatcggtaaccggcttttctccctttgggtcatcttggcttttcttttaggagacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctatcggtaaccggcttttctccctttgggtcatcttggcttttcttttaggagacaag 601
Query: 241 gtcttcgttgaattcttgactgatgaaattaaggaagaaaagaagatccagaaacacaag 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gccttcgttgaattcttgactgatgaaattaaggaagaaaagaagatccagaaacacaag 541
Query: 301 tcccttcccaagatgtctggagattgggagctggaggcgaacggcacggaggctaaatta 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 540 tcccttcccaagatgtctggagattgggagctggaggtgaacggcacggaggctaaatta 481
Query: 361 ttgcgcaaagttgccggagaaaagtaagtggcccagggcttgtattctgggttctcaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttgcgcaaagttgccggagaaaagtaagtggcccagggcttgtattctgggttctcaagt 421
Query: 421 cgggaatccctgactacagcaccctgtcctggccatccccaggagagcctcagcttaggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cgggaatccctgactacagcaccctgtcctggccatccccaggagagcctcagcttaggc 361
Query: 481 c 481
|
Sbjct: 360 c 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 880
Length adjustment: 10
Effective length of query: 471
Effective length of database: 870
Effective search space: 409770
Effective search space used: 409770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
