BAC Information

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BAC

Clone NameMSMg01-054M05
Chromosome11 (Build37)
Map Location 29,560,339 - 29,560,672
singlet/doubletsinglet
Overlap genenone
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream geneRtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054M05.T7 (MSMg01no054_m05.b1)MSMg01-054M05.TJ (MSMg01no054_m05.g1)
ACCAG282609AG282610
length756802
length of high quality
(start - end)
49 (300 - 348)389 (127 - 515)
definitionCHROMAT_FILE: MSMg01no054_m05.b1 PHD_FILE: MSMg01no054_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:01 2005CHROMAT_FILE: MSMg01no054_m05.g1 PHD_FILE: MSMg01no054_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTTTTTNNNNNNNNTTGTTTTTCGTTGTCCGGAAACTGGGGGGA
ATTATAATTGCGGCGGNAAAAGANNTAAATTCGGAGNAGANGGNGGNNNN
NNGGNTTACAATAGTAGANNGGNNNGNNGNGTANNGGANANNGGTAGGNN
AGATNAAAGTTAACGCCGAGAAGGTGGAAGNAATNNNANTAAAATTAGGG
ATTAGATAAGGGTGGGAAGTTTGGTGATAGGTATTTAAAATTGTAGTTGA
AGTGGTAGGGAGAGTAATTAGAGAAGAAAAGGAGATTAAGGGGATTTTAA
TTGGAAAGGAAGAAGGTAAAATATTATTTTTTGAAGATGATATGTTAGGA
GAGATAAGTGTTTTTTTTTAGGAGAGGAGAGAAGNGNNAAAGATGATAAA
NAGGTTTGGTGAAGTAGGTGGAGAGGAAAGTAAGTTAAAGAAGTTAATGG
GGTTTGTTTAGAGAAAGAAAAAAAAGATTGAGAAAGAAATTAGGGAAATA
ATAGGGTTTTGAATAGTGAGAAATAATATAGAAATAGGTTGGGGTGATTG
TAAGTAAGGAAGTGAAAGATGTGTATAATAAGAAATTAAAGTGGTTGAAT
AAAGAAATTAATGAAGAATTTAGAAGATGGAGAGATTTGNAATGGTTAAG
GATTGGGAAGGATAAAAATTGGAAAAATGGAGTATGTTGGGATAAAGGTA
ATTTATGGAGTTAAAGGGAATGTGTAGTGATAATTGTGATTTTGATTTGG
TTAAAG
NNNNTTTTTTNNNNNNNNNNNNNACCTCTNAATACCCTAATATACGANNN
CACAATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTGTTTTGTTTCATTAACATTT
TTAGAAATTAAACCTAAAAACTTCCACATGCTAGGAAATACCCTACTGTT
AAGCTACAACCTCAGATAATATGGAGAATTTTCAAAAGAGGATTGAACCG
CACCCTGGGTCAAAACAGGAGTAAAACTTGCACCTTCATCCAAAGAACAG
TTGATTTCAACCTGCTGGCCAATTTAGTGAGTTCTGGTTATGAGTATTCT
AATGTGAAATAGAAACATTATTTTTGTGGAAATTGTGTTTCTTTTCCTTC
ACATATAGGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTGC
GTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTCAATTCTACATCTTATGACTCCTCCTTACTCTCA
CTCCCCCCTCTATCTACCCTCTTTTTTATACCCCCTTCCCCTCTACTCCC
TATCTCAACTCAAAATTTTTATTCTTTTATAATCATCTTTCTTAATCATC
ATATCAAGCGAACTTTTTTCCTTTACAACTATCTAATTTATACTTATTTT
TTATCTTACTTTCTGAATTACCTAGCCAATATTGCTACACGTACAACCTC
CATCTATCTTGTAACGTTGGTGTTCTTACATTTAACAAATTTTCCTCTAC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_m05.g1 MSMg01no054_m05.g1 CHROMAT_FILE:
MSMg01no054_m05.g1 PHD_FILE: MSMg01no054_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:01 2005
         (389 letters)



>mm_chr11_29560191_29560979
          Length = 789

 Score =  592 bits (306), Expect = e-173
 Identities = 327/334 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgttttgtttcattaacatttttagaaattaaacctaaaaacttccacatgctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tattgttttgtttcattaacatttttagaaattaaacctaaaaacttccacatgctagga 423

                                                                       
Query: 61  aataccctactgttaagctacaacctcagataatatggagaattttcaaaagaggattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aataccctactgttaagctacaacctcagataatatggagaattttcaaaagaggattga 363

                                                                       
Query: 121 accgcaccctgggtcaaaacaggagtaaaacttgcaccttcatccaaagaacagttgatt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 362 accgcaccctgggtcaaaacaggagtaaaacttgcactttcatccaaagaacagttgatt 303

                                                                       
Query: 181 tcaacctgctggccaatttagtgagttctggttatgagtattctaatgtgaaatagaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcaacctgctggccaatttagtgagttctggttatgagtattctaatgtgaaatagaaac 243

                                                                       
Query: 241 attatttttgtggaaattgtgtttcttttccttcacatataggtgtgtgtgtgtgtgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 242 attatttttgtggaaattgtgtttcttttccttcacatataggtgtgtgtgtgtgtgtgt 183

                                             
Query: 301 gtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgt 334
           ||||| ||||| ||||| ||||| ||||| ||||
Sbjct: 182 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)