BAC Information

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BAC

Clone NameMSMg01-055A15
Chromosome11 (Build37)
Map Location 23,608,221 - 23,608,658
singlet/doubletsinglet
Overlap gene4933435A13Rik
Upstream geneLOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13
Downstream geneRel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055A15.T7 (MSMg01no055_a15.b1)MSMg01-055A15.TJ (MSMg01no055_a15.g1)
ACCAG282815AG282816
length736729
length of high quality
(start - end)
248 (66 - 313)438 (76 - 513)
definitionCHROMAT_FILE: MSMg01no055_a15.b1 PHD_FILE: MSMg01no055_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:21 2005CHROMAT_FILE: MSMg01no055_a15.g1 PHD_FILE: MSMg01no055_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGCCCNAAACCAAATGGCTGAGAAGCACCTAAAAAATGTCCAAC
ATCCTTAATCATCAGGCCAATGCAAATCAAAACAACCCTGAGATTCCATC
CCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGC
TGGCAAGGATGTACAGAAAGAGGAACGCTCCTCCATTGTTGGTGGGATTA
TAAGCTGGTATAACCAACCACTCTGGAAATCAGTTTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATCCAGAAATACCACAATACCACTC
CTGTTTTTTTACCCCCCCCACCCCCCAATGTGTAATAAGGACACATGCTC
CACTATATTCATAGCAACCTAAATTATAATAGCCAGAAGCTGGAAAGAAC
CCTGTTGTCCCTCCTCAGAGGAATGGATATTGAAAATGTGGTACGTTTAT
ACAATGGAATACTACTCATCTATTAAAAACTCATGAACTTATGAAATTCC
TCTATGCAAAGGCATTATTCTGAAGGCTTATCATCCCGCACTGAGGTAAC
CCCAATCTATTATTGAACTCTTCTCGTTATAATTCCTCTCTCTGATATAT
TCCATCATATCTTCCGTATATATTATCATTTCAAATTCTGCAAATCCACT
TAGATTCTCTCCTCGTATAGATTAATATTCACCTCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTCAGCATCCTTATCTTTCCAGC
TTCCACAAGAATGGCCCAGTAGGCTCTTCTTAGATCATCAAGAGCGTCTC
TCACTCAAGGTTCCCAACTCTTCCACATTCCTCCCATAAGTCAGTTCCAG
AGGCTTAAGGACCACAGGGCCAGGCTCATCACACAGCAGTGGGCTGGGCT
CAGTATTGATCCTACCTTTGTTACTTTACCTTTGCTGTGTAAAATACCCT
GATAGAATATTTGGAGAGAAAAGTTTTGGCTCACAGTACTGTACAAAAAG
GAGCCAGTGAGCTGAACACAAGTATCCATTGAGTCTTTCTTCCTGATGTC
TTGATCTGCCCTGGCTGCTTTCGTTAAGGACATAGTCTGAAGAAGAGGCC
TGGAGAGGCATGCCAGGCACATTAAGAGCACCTAAGCTTGACTTGCTTTC
TTGGGATTCTTAAGTATTTCTTGATTTTAAACATGTAAGATGATATAATT
CATCCACTCAGTGTATTTCAGCTCTTGCTTAGTTGATGTCTTTTTCATTT
CACCCCACATAGTCGGTATTTACCAGAATGGCAGTTTTGAAAGCTTTGAG
TAAGACAAAAGAAGAAGACTTCCTCGGGTAAGTATAGACGTACGGAGTAC
TGCACATGTTTACAAACAGTGCCGAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_a15.g1 MSMg01no055_a15.g1 CHROMAT_FILE:
MSMg01no055_a15.g1 PHD_FILE: MSMg01no055_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:21 2005
         (438 letters)



>mm_chr11_23608021_23608858
          Length = 838

 Score =  816 bits (422), Expect = 0.0
 Identities = 434/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcagcatccttatctttccagcttccacaagaatggcccagtaggctcttcttagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcagcatccttatctttccagcttccacaagaatggcccagtaggctcttcttagat 260

                                                                       
Query: 61  catcaagagcgtctctcactcaaggttcccaactcttccacattcctcccataagtcagt 120
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 catcaagagcttctctcactcaaggttcccaactcttccacattcctcccgtaagtcagt 320

                                                                       
Query: 121 tccagaggcttaaggaccacagggccaggctcatcacacagcagtgggctgggctcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagaggcttaaggaccacagggccaggctcatcacacagcagtgggctgggctcagta 380

                                                                       
Query: 181 ttgatcctacctttgttactttacctttgctgtgtaaaataccctgatagaatatttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatcctacctttgttactttacctttgctgtgtaaaataccctgatagaatatttgga 440

                                                                       
Query: 241 gagaaaagttttggctcacagtactgtacaaaaaggagccagtgagctgaacacaagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaaaagttttggctcacagtactgtacaaaaaggagccagtgagctgaacacaagtat 500

                                                                       
Query: 301 ccattgagtctttcttcctgatgtcttgatctgccctggctgctttcgttaaggacatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattgagtctttcttcctgatgtcttgatctgccctggctgctttcgttaaggacatag 560

                                                                       
Query: 361 tctgaagaagaggcctggagaggcatgccaggcacattaagagcacctaagcttgacttg 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 561 tctgaagaagaggcctggagaggcatgccaggtacattaagagcacctaagtttgacttg 620

                             
Query: 421 ctttcttgggattcttaa 438
           ||||||||||||||||||
Sbjct: 621 ctttcttgggattcttaa 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)