BAC Information

Click to search

BAC

Clone NameMSMg01-055E19
Chromosome11 (Build37)
Map Location 72,210,139 - 72,210,567
singlet/doubletsinglet
Overlap geneD130058I21Rik
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1
Downstream geneGgt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055E19.T7 (MSMg01no055_e19.b1)MSMg01-055E19.TJ (MSMg01no055_e19.g1)
ACCAG283006AG283007
length700737
length of high quality
(start - end)
154 (444 - 597)429 (77 - 505)
definitionCHROMAT_FILE: MSMg01no055_e19.b1 PHD_FILE: MSMg01no055_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:40 2005CHROMAT_FILE: MSMg01no055_e19.g1 PHD_FILE: MSMg01no055_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCGGAACCCGAGCGCGGAA
NGCACNTGTTACGNGACCAGGCAGGNACAGAANNNAGCANNACACNACAC
AGCAACAGACCAAACCCCCACAAGGCCCCGGNGNGGNCCGAAAAAAAGGG
CGCCACCGCGAANAANAANAAAGAACAGGCAGNAGGAACAACNACGAAAC
AGCCACGAAAACCACGAGGCAGCAGCGACACGCAAAAAGNCCAGGCTGTT
CANANNAGACAACACAGGAGAAAGNANCCCAGCAACNACCCAACCCNGAN
GAGNCGNGNCTCTTTTTTTTTTCCNAGCCGAAGGNGGAGGACCAGCCGAA
AAATATTTTTTTCCACCCCCCCATCTTAAATCCTAAACAACTTAAGCTTA
TAATAAAACTATGATTAAACAAACATCAACCCCACCAGAGACCTGAGAAG
AAATAAATGTTACCTGAGTATGCAGGAAGCACAGAGACCAAAAGTTATAG
AAATGACAGAGACAGCTGATTTCCTGGGCAGTCCCCAATATTCGCTATAC
TGCTGGAGCACCTATCTTCAGCCTCTTGGTCCAGAACATCTGACAGACCT
TATGTGAAGCAAAGAATATGAAGGGCTTGCTTACCCTGTCTCTGTTTTTT
TTTGACAATCAACCTCCCCTGCGTTCATTTGTCCTTTCCGATTTGGCCGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCATGAAGCCTAGAGGGCTA
AGCAGTGCCAGTTTATGCTCTGGCCACCGTGGTCACCTATAACCAACGAT
CCAACTGGGTTGAGAGGGACAGTCTTGGGCAATGTGGTGGTGGCCCTGTG
CCCCATGTTCTGAGGAACATGGCTTCCCTAGGCAGTTAGGGCCGGAGTTA
CTCCAGGATGTGCTTGCCCAGCAGGACGATTTGAGAGCTTGGAGTCTCCA
GACTCCACACAGATGTTTCTTCTATTCTCAACCTGGGGGGAGGGTGGTGT
CTGGGCTGGCTTTGGCTCCCTTCTCTCCCCAAGCAAACAGCAGGATAAGA
CCTTGGCCTTACCTCCCTGCGGCCCAAGTCTGCTCCCGGCTGGTGAGGGG
AGCAGGATGTGATGGGGCCTCTGAGCTGACTGCTGGCTTTTTCGCTGACT
GCAAAGAGTAGGGAAGGCCGTCAGACGCAGGTCTGCGCTGGGAAGCTTAC
TCTGAGCCTGGGGAGGTACCTCCCCTTATGACTCATCTGTGGTATTATCT
CTCACATACAAGGCATAGAGGCCTGCTTAGGTGGCCTTGCTTCTCAAGAC
CTTCTGGGAAGGCATTGTGCTTAAATTTCTGGTTTCTTGGACAGCACTTG
CTTTTAAAATCTCTTGTGACCCTTTGTTTGACTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_e19.g1 MSMg01no055_e19.g1 CHROMAT_FILE:
MSMg01no055_e19.g1 PHD_FILE: MSMg01no055_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:40 2005
         (429 letters)



>mm_chr11_72209939_72210767
          Length = 829

 Score =  801 bits (414), Expect = 0.0
 Identities = 426/430 (99%), Gaps = 2/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtcatgaagcctagagggctaagcagtgccagtttatgctctggccaccgtggtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttgtcatgaagcctagagggctaagcagtgccagtttatgctctggccaccgtggtcac 570

                                                                       
Query: 61  ctataaccaacgatccaactgggttgagagggacagtcttgggcaatgtggtggtggccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctataaccaacgatccaactgggttgagagggacagtcttgggcaatgtggtggtggccc 510

                                                                       
Query: 121 tgtgccccatgttctgaggaacatggcttccctaggcagttagggccggagttactccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgtgccccatgttctgaggaacatggcttccctaggcagttagggccggagttactccag 450

                                                                       
Query: 181 gatgtgcttgcccagcaggac-gatttgagagcttggagtctccagactccacacagatg 239
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatgtgcttgcccagcaggacag-tttgagagcttggagtctccagactccacacagatg 391

                                                                       
Query: 240 tttcttctattctcaacctggggggagggtggtgtctgggctggctttggctcccttctc 299
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 390 tttcttctattctcaacctggggggagggtggtggctgggctggctttggctcccttctc 331

                                                                       
Query: 300 tccccaagcaaacagcaggataagaccttggccttacctccctgcggcccaagtctgctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tccccaagcaaacagcaggataagaccttggccttacctccctgcggcccaagtctgctc 271

                                                                       
Query: 360 ccggctggtgaggggagcaggatgtgatggggcctctgagctgactgctggctttttcgc 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccggctggggaggggagcaggatgtgatggggcctctgagctgactgctggctttttcgc 211

                     
Query: 420 tgactgcaaa 429
           ||||||||||
Sbjct: 210 tgactgcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)