BAC Information

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BAC

Clone NameMSMg01-055F18
Chromosome11 (Build37)
Map Location 4,398,209 - 4,398,498
singlet/doubletsinglet
Overlap geneMtmr3
Upstream genePla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
Downstream geneLOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055F18.T7 (MSMg01no055_f18.b1)MSMg01-055F18.TJ (MSMg01no055_f18.g1)
ACCAG283052AG283053
length706744
length of high quality
(start - end)
291 (70 - 360)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no055_f18.b1 PHD_FILE: MSMg01no055_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:45 2005CHROMAT_FILE: MSMg01no055_f18.g1 PHD_FILE: MSMg01no055_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGAAATACCCAAATTACAACCCCGACTAACCAGCTAAGCTTCACATG
ACAGTTGATGGAGAAAGAAAAAAAAAGTTTCAAGGGAAAAAAAAAACAAA
TTTAAACAATTTCTGTCCACAAATTAAATTCTACAGAAGGCACTAGAAAG
AAAAAAAATCTGTCCAAAATAAAAATTAGTGACACCTGAGAAGGCAAAAA
TGATAATCAATCGCAGAACAGTTAATCAAACAAAGAGGAGGGGGATGTGA
ACTCACCTAAACAAAATATTAGAAATTAATAAACACTGCTTAAAAATAAC
TTTCAATATTTATTGTCTCCACCCCCCACTTAAAAAAAAGACACAGGAAA
ACAGGATCTAACTTTTTGCTCTACACAAGAAACACACCTCACCACCAAAG
ACACCTTTATCTTAGGATAAAAGGATGTAAAAAGATATTATAAGTAAAAA
GAACCAAGAAGCAAGTAGGCATAGATATTTTAATATCTGAAAAAACAGAT
TTCAAACAAAAACTAATCAGAAAAGATGGGAAGGATACTACATATACACT
AAAGAAAAAATCCACAAAGAGTATAATTCTAAACATTTATGCACCAAACA
CAAGGATACCCAATTTCATAAGTGAAACACTACTACAGCTAAAAATATAT
ATTGAT
ACATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGAGTTTGTTTGAGGAGGGACAGGT
CTTGACAAAGCACTGGAAAATCTTTTGTTTCAAGGCAAATGTTGTCTTCC
TTGCCATTGTGACAAGAATGAAGTATTTGGATGAGGATGTGGGTTGTCTC
CAGTCTGTGGAGAAAAATACCTGCTTTTATGAAAGGACTACAGGGGTAGA
AATGAGGGTAAGACATTAGGTGAAGTGGGAATTTCATCTAATGTGCTTTG
GGAATTGGTTTTGGAAAATAAATCCTTATCAATTTCAAGAGGCAGAGGGT
ACACTGAAGGCAATTATCTATGTCTGGCTCACCCCCGCTCCATTGATTGG
AGTTCATTTTGTTCTGTTTTTACTGCAATATGTGCCTCTTGTACTAGATA
GTCACAGTTCTAGGAGAGCTGGGTCTGCTTAGTTTTTATCCCCTTCTTGA
TGTCTGCAGATTCCTCTCTGTCAAATACTTCACGAGCAGAAAGTTTATTT
CTCCAGCCTCAGAAGCTTTTGATCTTGGATGTACGCTCCTATGCAGCAGC
TGTGTCCAATCGAGTCAAAGGAGGAGGCTGTTATTGCCTAGTTGTTTGCA
TAGTCTGTCCCTGCATCATTTGTCTTTGTCAGTGCCCCTCACTCACCGCC
TATGCTTTATTTATAGTATATGCTACCCGTTTTCTTCCCCCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_f18.g1 MSMg01no055_f18.g1 CHROMAT_FILE:
MSMg01no055_f18.g1 PHD_FILE: MSMg01no055_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:45 2005
         (291 letters)



>mm_chr11_4398009_4398699
          Length = 691

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagtttgtttgaggagggacaggtcttgacaaagcactggaaaatcttttgtttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agtgagtttgtttgaggagggacaggtcttgacaaagcactggaaaatcttttgtttcaa 431

                                                                       
Query: 61  ggcaaatgttgtcttccttgccattgtgacaagaatgaagtatttggatgaggatgtggg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 430 ggcaaatgttgtcttccttgccattgtgacaagaatgaagtaattggatgaggatgtggg 371

                                                                       
Query: 121 ttgtctccagtctgtggagaaaaatacctgcttttatgaaaggactacaggggtagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgtctccagtctgtggagaaaaatacctgcttttatgaaaggactacaggggtagaaat 311

                                                                       
Query: 181 gagggtaagacattaggtgaagtgggaatttcatctaatgtgctttgggaattggttttg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 310 gagggtaagacattaggtgaagtgggagtttcatctaatgtgctttgggaattggttttg 251

                                                             
Query: 241 gaaaataaatccttatcaatttcaagaggcagagggtacactgaaggcaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaaaataaatccttatcaatttcaagaggcagagggtacactgaaggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)