BAC Information

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BAC

Clone NameMSMg01-055K21
Chromosome11 (Build37)
Map Location 52,172,525 - 52,172,720
singlet/doubletsinglet
Overlap genenone
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
Downstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055K21.T7 (MSMg01no055_k21.b1)MSMg01-055K21.TJ (MSMg01no055_k21.g1)
ACCAG283283AG283284
length7251,124
length of high quality
(start - end)
196 (128 - 323)---
definitionCHROMAT_FILE: MSMg01no055_k21.b1 PHD_FILE: MSMg01no055_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:08 2005CHROMAT_FILE: MSMg01no055_k21.g1 PHD_FILE: MSMg01no055_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAGAGAATCCGCGG
AATTCCACCCATTTTCCACAACGGCAAACCAGAGAAAGTGTTTAATTTAT
TTACAAGGTAACTCAAGGTAACCCCAAAGATCACCCCAAAGGCCCCCAAC
TAACAAACCTGCATGCATCCCTGGACCAATGCATGACTTACCAGCAGCTC
AAGAGTTCCCTCTCCAGCAACTGTTGACTAGAGGGACCTCGTGAGTCCGA
TAGCTGGACTTCCCAAGCCATGTATGTTTTGGGTTTTGTTTGTTTGTTTG
TTTGTTTGTTTTTAACTTTCTAGTGCTGAGGACTGAACCTGACTTTTATG
AACCTCTTTCCTTTTTTTAATCCAACGCTCCACATCCAAAGAATTAGCCA
CACAAGAAAGGCTAACAAAATCAACCATAATAAACAGGAGACCTGGGAGC
CCCTGTGACTGAAATCCAAGTGCACCAGAAATGTCATTCATTGATCTATC
TTCCCAGTCACAGTCTGCAGGAAGTGGAAAAGCAAGTCACCCTTTATTCC
CTCCCCTCTTATTCTTCAATATTATAACGCGGATACTCGCCCAGATCCTC
CTCACCATGGGAACATATGACATTATCTGATTGGCCCCTATTACATTAAT
ACCCCGATTTCACTGAAAGCCCCATGTTAAGATACCCAAACTATTTTCAC
TGTTTTATTTTTATATACACCCCCA
AGAGCGCGTGGGTTTGGCGCGCACGCTGGTTGGCGGAGACCACTATGAGG
AAAAAAAAAAATAATACTAAGATATNCATTTTCCCGCCCGCCTCCAATAT
AATAGATAGAGAGATATAATATGTACGACGCGGGCGTTTTAAGGTTTGCG
ACGGTGTCTAATATCAGCGCCACGTCTCTCTTATATACGGCCGCGGTCGA
GTATTTTATAAAATGATGAGGAGAGAAGGGAAGTGCCTGATAAGCCGTCG
CCCGTACACGCGCATATTTATGAGGGGATGTTAGGGAGATGTGCGGTGTG
TCCATTAGCAGACACCATCGAGTGTGCGAGACATCATTATTGTGATCACT
TTTGGCGGGTCCGCGAAATGTCTACCAATATTGTTATACGAGTGGAACAA
AGCATATGGGAGGGTGCCGGGAACTACTTATATCCGACAGCGAGCGAATG
GTGACGTTGCGATAGTATTGTTATTCATTAGTTATACGGTTGGTGGCGAT
TCCACGAGTCGATATCCCCGTAGCGAATACTATAATGATAACTACACATC
ACCGTGTTCTTGTAAATAATCGATCACTCGCATGATTTATAAACGTAGAA
GGTGTTGTACTCGAATGAGGTCAGTAGCCAACGCGATGCAGAGGATACGC
TNTATTTTTCATATTCGTTATAATCGGACTACCTCGTTCAATCACGCCGT
CTATGCGCACCTGATTTATTGGCCTCGTAACATCTCCGGTCTATATATTC
GCGGTTATATTGCGATTTTTATTCCCATGCGATATACTACGCGATTTCTT
ATGGTTACCGCCCATCGACACGCCGATCGTTATATTCGGTAGTTATAATC
GCGCATATATATATAGCCGACGCGGCACGCCACCCACACATATACGTGTT
ATTTATTTTATGCCCACCGTCTTCTTCACCTACGTTTATATTCAGCTGGT
TGCGTATGATCAGAGGGTAATTGTTGTGATAGTGGTGGGAGGGACTTTTT
ATTATCGCGACGGATTATGCCACCTATTCCGTGTATTGCCGTTTGATCAG
AATTGAATACGCGATGTATCCGTGGATCTCAACTTGCAGATCGCTTTACG
CATAGTGAGTTATCGCGTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_k21.b1 MSMg01no055_k21.b1 CHROMAT_FILE:
MSMg01no055_k21.b1 PHD_FILE: MSMg01no055_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:08 2005
         (196 letters)



>mm_chr11_52172364_52172959
          Length = 596

 Score =  371 bits (192), Expect = e-107
 Identities = 195/196 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcaccccaaaggcccccaactaacaaacctgcatgcatccctggaccaatgcatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agatcaccccaaaggcccccaactaacaaacctgcatgcatccctggaccaatgcatgac 298

                                                                       
Query: 61  ttaccagcagctcaagagttccctctccagcaactgttgactagagggacctcgtgagtc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttatcagcagctcaagagttccctctccagcaactgttgactagagggacctcgtgagtc 238

                                                                       
Query: 121 cgatagctggacttcccaagccatgtatgttttgggttttgtttgtttgtttgtttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cgatagctggacttcccaagccatgtatgttttgggttttgtttgtttgtttgtttgttt 178

                           
Query: 181 gtttttaactttctag 196
           ||||||||||||||||
Sbjct: 177 gtttttaactttctag 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)