BAC Information

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BAC

Clone NameMSMg01-055O06
Chromosome11 (Build37)
Map Location 7,783,327 - 7,783,975
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055O06.T7 (MSMg01no055_o06.b1)MSMg01-055O06.TJ (MSMg01no055_o06.g1)
ACCAG283437AG283438
length696715
length of high quality
(start - end)		652 (45 - 696)615 (83 - 697)
definitionCHROMAT_FILE: MSMg01no055_o06.b1 PHD_FILE: MSMg01no055_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:25 2005CHROMAT_FILE: MSMg01no055_o06.g1 PHD_FILE: MSMg01no055_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATGTTATAAAACAATAAGATGTATAGGAAATGGTAGACAGCTAA
TTATCCTGATGTAATCATTCCACAGTGAATACATGTGGAATATCTCCACA
CAACGTGCTGGTCTGTGAATACATGCCAATATGTGTCAATTGAGGCACCA
AGAAAAGATTGATCTGTATACACACTTGCTAAGCCCTGAAGATCTTTAAA
CATGGTCCTTTTCAGTGATTTCATCCAGATCTATTAATTCACAGAAGCAG
TTATTGGATAAGATACAGCCCCCACCATGACCCCTGGCATTTATTTTGCA
TATGTGAATTTTTCTTGGAATGGATAACCACATTTTCAAACATCTTTCTC
ACACCCTTGCTCTTGTATAGTAGACTAAATTAGCATGTAGCAACAAATAC
TTTTTAATGCTTAGCCATCAGAACCTCTAGTTTTGTGCTGAGGAAAGGAA
AAAAGAGTGCTTTTAGGTGAGAGCTTGAAATAGAAAATCTCCCCACAACA
GTGAGACTTGAGGTATATTTTCAATCATTAAGTAAATCAAAGGCAGAGGA
AGCCACAGAACTGATGGAAAAACAGATGCCACTCATTTCTTCCTTCCGAT
ATTTTCTGGGATTTTCTCAGATAAAAACTGACCACTTATGAAATAG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTAGTATAATATTTGCT
ATATGTTTATCATATATACCTTTAAAAGGTTGAGACACGTTCCTCTTATT
ACCAATTCCTTAAGAGCTTTTACCATAAAGAGGAGTTGGATTCTGTCAGA
AACCTTTTCTGCAACTTTTCTGCAACTTCTCAGACAATCATATGATTCTT
GCTCTTAAATCTATTTATCTGATCTACTACATTTATTCACTTCCGTATGT
TAGGCAATTCCTGAATCCCTAAGAAACACTCAGATTAATTATGGTCACAG
TGAATCACCTTTCTCATATATCCTTGAATTCAGTTTGCATCTATTTTGTT
GAGAAATGTTAGATACATGTATTCATGGAGCTTGATCTATTATCTCTATC
TCTCTTTTTTTCTTTTTTGCTGTTATCTGGTTTGAATTTTGGAGTAATAT
GATCAAACTCTTCTATGAAAATGGCTTAATATTTAAAAGATGGGTCTTCC
CATATCAATTAATATAATTAACATTGTCTCTATAGTCATGACATGGGGTC
TAGCTCCCAAGCAATTTCAGATTCTATCAAGTTGACAGTTAAGTTTAATC
ATCAGAGAGTAATTTATTCCAGAAAAATACATATGATATTTCTCAACAAA
ATGCTTGCAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_o06.b1 MSMg01no055_o06.b1 CHROMAT_FILE:
MSMg01no055_o06.b1 PHD_FILE: MSMg01no055_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:25 2005
         (652 letters)



>mm_chr11_7782978_7784029
          Length = 1052

 Score = 1255 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttatgttataaaacaataagatgtataggaaatggtagacagctaattatcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 ggaattcttatgttataaaacaataagatgtataggaaatggtagacagctaattatcct 939

                                                                       
Query: 64  gatgtaatcattccacagtgaatacatgtggaatatctccacacaacgtgctggtctgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 gatgtaatcattccacagtgaatacatgtggaatatctccacacaacgtgctggtctgtg 879

                                                                       
Query: 124 aatacatgccaatatgtgtcaattgaggcaccaagaaaagattgatctgtatacacactt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 aatacatgccaatatgtgtcaattgaggcaccaagaaaagattgatctgtatacacactt 819

                                                                       
Query: 184 gctaagccctgaagatctttaaacatggtccttttcagtgatttcatccagatctattaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gctaagccctgaagatctttaaacatggtccttttcagtgatttcatccagatctattaa 759

                                                                       
Query: 244 ttcacagaagcagttattggataagatacagcccccaccatgacccctggcatttatttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttcacagaagcagttattggataagatacagcccccaccatgacccctggcatttatttt 699

                                                                       
Query: 304 gcatatgtgaatttttcttggaatggataaccacattttcaaacatctttctcacaccct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcatatgtgaatttttcttggaatggataaccacattttcaaacatctttctcacaccct 639

                                                                       
Query: 364 tgctcttgtatagtagactaaattagcatgtagcaacaaatactttttaatgcttagcca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgctcttgtatagtagactaaattagcatgtagcaacaaatactttttaatgcttagcca 579

                                                                       
Query: 424 tcagaacctctagttttgtgctgaggaaaggaaaaaagagtgcttttaggtgagagcttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tcagaacctctagttttgtgctgaggaaaggaaaaaagagtgcttttaggtgagagcttg 519

                                                                       
Query: 484 aaatagaaaatctccccacaacagtgagacttgaggtatattttcaatcattaagtaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaatagaaaatctccccacaacagtgagacttgaggtatattttcaatcattaagtaaat 459

                                                                       
Query: 544 caaaggcagaggaagccacagaactgatggaaaaacagatgccactcatttcttccttcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caaaggcagaggaagccacagaactgatggaaaaacagatgccactcatttcttccttcc 399

                                                            
Query: 604 gatattttctgggattttctcagataaaaactgaccacttatgaaatag 652
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gatattttctgggattttctcagataaaaactgaccacttatgaaatag 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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