Query= MSMg01no056_f15.b1 MSMg01no056_f15.b1 CHROMAT_FILE:
MSMg01no056_f15.b1 PHD_FILE: MSMg01no056_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:59 2005
(289 letters)
>mm_chr11_12755986_12756674
Length = 689
Score = 513 bits (265), Expect = e-150
Identities = 283/289 (97%)
Strand = Plus / Plus
Query: 1 ccttgtctaggcttacagttctagaactttagaaataaatattaggcagtacacctggcc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 201 ccttgtctaggcttacagttctaaaactttagaaataaatattaggcagtatatctggcc 260
Query: 61 caaggttaactcagaggcactcgacctagatgcacagatgttgtcctggagttagaaagt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggttaactcagaggcactcggcctagatgcacagatgttgtcctggagttagaaagt 320
Query: 121 ggcacttgtacctcacacccgtcagaatggctaagatcaaaaattcaggtgacagcagat 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacttgtacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagat 380
Query: 181 gctggtgaggatgtggagaaagaggaacactcctccattgttggtgggattgtaagcttg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gctggtgaggatgtggagaaagaggaacactcctccgttgttggtgggattgtaagcttg 440
Query: 241 tacaaccactctggaaatcagtctggcggttcctcagaaaattggacat 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaaccactctggaaatcagtctggcggttcctcagaaaattggacat 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_f15.g1 MSMg01no056_f15.g1 CHROMAT_FILE:
MSMg01no056_f15.g1 PHD_FILE: MSMg01no056_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:59 2005
(285 letters)
>mm_chr11_12897959_12898642
Length = 684
Score = 536 bits (277), Expect = e-157
Identities = 283/285 (99%), Gaps = 1/285 (0%)
Strand = Plus / Minus
Query: 1 caatgagggatgagagcggcttcaaggtcatcttcccaatatacccactcgatttgatca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 caatgagggatgagagcggcttcaaggtcatcttcccaatatacccact-gatttgatca 426
Query: 61 gatttgggtggtgtgctggccaggagctggtgactgcaatgcctccaactgactgagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gatttgggtggtgtgctggccaggagctggtgactgcaatgcctccaactgactgagaag 366
Query: 121 ggcaaggatgtgaggccgctgctggggatccacagtcatcatagaagccaatagctgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcaaggatgtgaggccgctgctggggatccacagtcatcatagaagccaatagctgtca 306
Query: 181 caatgctgaagaatgcctggggctttgtgggatgctgagatcactctgcacagcaaggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caatgctgaagaatgcctggggctttgtgggatgctgagatcactctgcacagcaaggac 246
Query: 241 cacactgtctcccttctggaacaccatatcgaaagggccttcccc 285
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 245 cacactgtcacccttctggaacaccatatcgaaagggccttcccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space: 186300
Effective search space used: 186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
