BAC Information

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BAC

Clone NameMSMg01-056J16
Chromosome11 (Build37)
Map Location 61,355,738 - 61,356,042
singlet/doubletsinglet
Overlap geneEpn2
Upstream geneAlkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056J16.T7 (MSMg01no056_j16.b1)MSMg01-056J16.TJ (MSMg01no056_j16.g1)
ACCAG283973AG283974
length739720
length of high quality
(start - end)
311 (42 - 352)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no056_j16.b1 PHD_FILE: MSMg01no056_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:19 2005CHROMAT_FILE: MSMg01no056_j16.g1 PHD_FILE: MSMg01no056_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAA
TTCCTCTGGTTTGCCCGTGGCAGAGCTGGACTAGGAGGCCTTACTGACTG
GAGGATGAGGGGCCTGGTAGCTCAATAGGCAGGAAGCAACCAGTCCTTGG
ATTTGTTCTAGAGAAGACCCAAGAAGGCTTATTGGAGGCCTGGATCATGC
TGATGTGGAGAGGAGATGAAGGCAGCTTTAAGGGCTCATAACTCAGTGTC
CAAGAGGCAGGGAAGAGAGAGGGTTGTGGCTATAGCAGTTTGGGGCTGCT
TGTTGAAGTACAGAGAGGCTGTTCTGTTCCAGTGCTTCCAGCTTTGCACT
GTTAGCTTCCCTATATTCACATAAAAGCTATTCCTCAGAAAGACTGGGCC
CCTGTGGCTCTCTGGTGGCCACCTGTCCAAGTATGCAGGTGGGGCGTGAG
ACTGCTGGGGGCAGCGGACGCGCGGACATCTGGGGGTGCGCTTCAGTGTT
AGATGTTTGGACGTTGTGGTCATAGCGTCGGGGATTACGAGGTGTCTGTG
GGTTACGGGTAGAGAGCGTAGGCGGTGCAGCTCTGATGGGGCACGGCTGA
GGAAGTAAAAGAAGGGGGTCTTCGTGGGAGTGGCGAGAGCTACCCGTGAG
CAGGGACCGCAAGCAAATTAATAATGAATGCGAGGGAAAGAGACAAAAAA
AAACACAACCTAAAAGAAAAAGAAAAAAAACCAACACAA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGACATCAGAAATCCTGAGTTCGGGCTGGC
GAGATGACTCAGTGTGTAAGAGCACTGACTGTTCTTCCAAAGGTCCTGAG
TTCAAATCCCAGTGTAGTTGCTGGTTTTGTGTGTCAACTTGACACAAGCT
GGAGTTATCACAGAGAAGGGAGCCTCCCTTGAGGAAATGCCTCCATGAGA
CCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGTGGGGAGGGCCCCT
TGTGTGTGGTACCATCTCTGGTTTGGTAGTCTTGGGTTCTATAAGAAAGC
AAGCAGAACATGCCAGACAACGCAAGCCCGCAAGTGACATCCTTCCATGG
ACTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACT
TCCTTTGGTGATAATCCGCTTTGTGGAAGTTGTTAAACTGAACAATCCCT
TTCCTCTTCCAACTTGCATCTTGTACATTTTGATCCTGTTAGTTCATATA
ATATATCCTGACTATTACTATTGTCTATTACTTAGAGTAGTATTCTCTGT
GACAAGTCTGACCATGGTTTCGGATTGACTGTGGTAATGACTTTATCAAT
TTCGAATCTAAAAAACCCATCGCCTCGATATATACCCCTGCGTATTGGTT
TGACCGAACCTAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_j16.b1 MSMg01no056_j16.b1 CHROMAT_FILE:
MSMg01no056_j16.b1 PHD_FILE: MSMg01no056_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:19 2005
         (311 letters)



>mm_chr11_61355512_61356222
          Length = 711

 Score =  532 bits (275), Expect = e-155
 Identities = 298/309 (96%), Gaps = 8/309 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctctggtttgcccg----tggcagagctggactaggaggccttactgactggag 62
           |||||||||||| |||   |    ||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaattcctctgg-ttg---gaggttggcagagctggactaggaggccttactgactggag 476

                                                                       
Query: 63  gatgaggggcctggtagctcaataggcaggaagcaaccagtccttggatttgttctagag 122
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gatgaggggcctggtagcttaataggcaggaagcaaccagtccttggatttgttctagag 416

                                                                       
Query: 123 aagacccaagaaggcttattggaggcctggatcatgctgatgtggagaggagatgaaggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagacccaagaaggcttattggaggcctggatcatgctgatgtggagaggagatgaaggc 356

                                                                       
Query: 183 agctttaagggctcataactcagtgtccaagaggcagggaagagagagggttgtggctat 242
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agctttaagggctcaaaactcagtgtccaagaggcagggaagagagagggttgtggctat 296

                                                                       
Query: 243 agcagtttggggctgcttgttgaagtacagagaggctgttctgttccagtgcttccagct 302
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 295 agcagtttggggctgcttgttgaagtacagagaggcagttctgttccagtgcttccagct 236

                    
Query: 303 ttgcactgt 311
           |||||||||
Sbjct: 235 ttgcactgt 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)