BAC Information

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BAC

Clone NameMSMg01-056L22
Chromosome11 (Build37)
Map Location 59,934,608 - 60,068,198
singlet/doubletdoublet
Overlap geneRai1, Srebf1, Tom1l2
Upstream geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L22.T7 (MSMg01no056_l22.b1)MSMg01-056L22.TJ (MSMg01no056_l22.g1)
ACCAG284078AG284079
length724716
length of high quality
(start - end)
181 (128 - 308)183 (124 - 306)
definitionCHROMAT_FILE: MSMg01no056_l22.b1 PHD_FILE: MSMg01no056_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:29 2005CHROMAT_FILE: MSMg01no056_l22.g1 PHD_FILE: MSMg01no056_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,934,608 - 59,934,787)(60,068,016 - 60,068,198)
sequence
TTCTATATTTGCGGCGCTAAACGACTACTATAGGTACAGGATCCGCGGAA
TTCCCATGCTCTGCCCCAGGGGATGCCTACAGCACAGCACAGCACAGCAC
AGCACAGTACAGCACAGCACAGCCCAGCACAGCACAACACAGCACAGCAC
AGCACAGCACAGCACAGCACAGCTGCCTCAGGCCCCACCTACCATCTCCT
CTTAGCCCTTTTGCTGTCCCAACCACCCAACTTGGGCTGAAGAAAAGCAG
TCAAGAGATGAAATCAGAGGATAGGCCCGGTTTCTTTCCTTTGCCAGACA
GCATTCAATATTAATGCATGCATTCTTTTATTCATGAGTCTAGTATTTTT
GAATACCTGTTATTAATCATATAAAACATGCGCGTTGGCCCAAGGGGTCC
TCCTGTCACATGCAGACCACAAACCTAATTCCTATCGATTTTATTTTCAG
TGATTTTGAAACAGGATCTCACTATCATCTGGAATGGCTAGGAATTCATT
ATGTATTCCAAATTGGACTATAACCATGGTCATCCTTCCTGCCTTAGTCT
ACCACGAGCTGAGATTACAGGTACGAACAAACCAGCTGATTCAAACAAAT
TTTCGAAATACACCCCATGCGTTATAACATGGACCTAATTTTCTTCTATT
CATTCACCTGAATTTTCCTGTTTTTATCTATCTTATATGTCTGAATGTTT
TCTATCACAACCCTCTTTTATTGT
CATGCTGTGNGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCCCAAATTCTCTGTTCCTTTGCCTTGAAAAGGTTTAGAGGA
TAAAAAGATTATGTTGTGCAGGAGGGATGAAACTGTCTCTTGAAGGGAAG
ATAACTGCATCAGGGTTAACGAGGCAGCAAAGAGGGTATTTGATCCAGTG
TTCTGACTGACGGCAGGCATTTGCAGAAGTGACTGGCTGCTGAGAACCAC
AGATAGGAGGATGCCAGAGCGGAAGGCCTTGGCACTGAAGGAATCCCTGG
CCCAGAGTCTGCATGTTGTAAAGAAAGACCTGCACAAGTTGCTGGCCTCC
GGCCCAGGAGAGAATCAGCCACTGCTCCTCATGGTTAAGAATAGAGGGGG
ACTGAGGTATCTCCAACAGCCTTCTGTGATGGCGGTAGATGACACCATGG
AGGCTCATGAGGGTGGTCGTCTGGTACAGAGTGACACAAATCCCAAGGTT
ATGCTCCATCTCATTTTCCTTTTCTTTTTAAACATGATTTTTATAAATTT
TTATTGATGTGCCTTGTGTGAGTATATTGTGCATTGTAGTACAGACGTAT
AACAGAATGCGATATCTTATCTCCTGTAATTTGTCAGTTATGCGGTTATG
AACCCCCCTTTTGTGTGCCACTATATGTAACTCGGCTCCTCTGCATCCGC
ATCGGCCACTTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l22.b1 MSMg01no056_l22.b1 CHROMAT_FILE:
MSMg01no056_l22.b1 PHD_FILE: MSMg01no056_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:29 2005
         (181 letters)



>mm_chr11_59934408_59934988
          Length = 581

 Score =  340 bits (176), Expect = 2e-98
 Identities = 179/180 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcacaacacagcacagcacagcacagcacagcacagcacagctgcctcaggcccca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcacagcacagcacagcacagcacagcacagcacagcacagctgcctcaggcccca 260

                                                                       
Query: 61  cctaccatctcctcttagcccttttgctgtcccaaccacccaacttgggctgaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaccatctcctcttagcccttttgctgtcccaaccacccaacttgggctgaagaaaag 320

                                                                       
Query: 121 cagtcaagagatgaaatcagaggataggcccggtttctttcctttgccagacagcattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtcaagagatgaaatcagaggataggcccggtttctttcctttgccagacagcattca 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no056_l22.g1 MSMg01no056_l22.g1 CHROMAT_FILE:
MSMg01no056_l22.g1 PHD_FILE: MSMg01no056_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:29 2005
         (183 letters)



>mm_chr11_60067816_60068398
          Length = 583

 Score =  339 bits (175), Expect = 9e-98
 Identities = 181/183 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggatgaaactgtctcttgaagggaagataactgcatcagggttaacgaggcagcaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggatgaaactgtctcttgaagggaagataactgcatcagggttaacgaggcagcaaaga 324

                                                                       
Query: 61  gggtatttgatccagtgttctgactgacggcaggcatttgcagaagtgactggctgctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gggtatttgatccagtgttctgactgacggcaggcatttgcagaagtgactggctgctga 264

                                                                       
Query: 121 gaaccacagataggaggatgccagagcggaaggccttggcactgaaggaatccctggccc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 gaaccagagataggaggatgccagagcggaaggccttggcactgaaggaattcctggccc 204

              
Query: 181 aga 183
           |||
Sbjct: 203 aga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)