BAC Information

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BAC

Clone NameMSMg01-057D01
Chromosome11 (Build37)
Map Location 77,014,609 - 77,015,092
singlet/doubletsinglet
Overlap genenone
Upstream gene2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108
Downstream geneSsh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057D01.T7 (MSMg01no057_d01.b1)MSMg01-057D01.TJ (MSMg01no057_d01.g1)
ACCAG284409AG284410
length696948
length of high quality
(start - end)
652 (45 - 696)---
definitionCHROMAT_FILE: MSMg01no057_d01.b1 PHD_FILE: MSMg01no057_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:03 2005CHROMAT_FILE: MSMg01no057_d01.g1 PHD_FILE: MSMg01no057_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGATCCGCGGA
ATTCACTTTTTGCCAGCACCACCCGTATGTAATCAAACTATGACACGATA
CTTGGCACAGCAATGATTTTATAATTTGTCACTGGAAATGCAATCATTTT
CAGTGAAGTGGAAGTTATTTTAGTTTCTCAGTATGAATAAATAAGCCAGA
TAAATCATATTCCTCAAAGAGCTCTCCCCTCACCAAGAGTTTAAAAAGCT
TTTTAGGGAGTTTATCATACTCTAATTTATCTTTCTCATGTTAATTAGGG
AGACATCAAAGGTCTTCTATGTCTTAACTACTATTTTTTTTAAAAAAAAA
TTAATGGAGAAGTTGGGGATGGCATAACATGGCTGTAATCCCAGCACTTG
GGAGGCTGAGGCAGGAGGATCAAAGGTTAAAGTCTGCCTGTGCTGTGCTT
GTCTCCAAAGATAAAGTTAATGAAGATGACAATGTTTAAAGAGTCAGTTG
CATTATTATTATTGTTATCATTATTATTTCAGATGATAGTGGTGGTGACT
GTGATGGTGGCCTTGTTTTCCTGGGGAGGGGGGTGCTTTGGTCAGTAACA
GTAATAACAGCTGTGCACTTGGACAGTTCAGCAGTTGAGAATGCATTCAG
TAGAATGCCAGGGTGTGGTGTGGCAGGAAATGACAGAGGTTATCAC
CCCCTCCTTTCCTNTTTTTNCTNNTTTTNCCTTTTTTTTCTTTTAATCCT
CTTTTCTGTCTCTTTTCCCTCTCTTCCCCCCGCATACCTTTCTCTCCCCT
TCCCGCTTTCACTTANCCTTCCCCTCCTCTTCGCCTATTCTATTACCTCC
ACCTTCGTACTATTCTTTATCTCTCTTTCATCGACAATGGTGAAAGGATG
AGTAGCAACGCCCCGCACGCGTTCCGCACGCGCATTTCTTCTCTTCACAC
CAACATGCGGTAGCGTAATATGGGGCAGTGAATGCGTGGGAGGAAGTGAA
GTTGCTGAGTTTAGCAACAGTTCCTATAGTACTGCTATATCAATATCGTT
TATGTCCATGTCATACATAACTGTACATAACAAAATCCTAGTAAATAAGA
GTAAATGGCAAATAAGCTATAAGCGAAAACGAAAGACATTATGAAGTAGA
TTGCAGGAAAAAACGAATAGATAAACACGAGTGAGTATAGTGATGAAAGA
GGAAAAAGGGACGGAAAGATAGAATACGAATAGTAGTGACGTAACATAGG
TGTTGATTCGCGTACAGCGCAGAAAACAATTATTCGAGGGCAACGGTGAG
AGTGACTGGTTAAAAGATAAAGGCGCGTATACTAGTCAGAAAAGACGAGG
AAGGGTATTAGTGTAAGGTAAGTATGATTGAAAGAGAAGTTAATAGAGAA
AAAAGTTAGGCAGTGTAGAGAGATAGGTATACTATTTAGACATGACATTG
TGCCTGTATATACTAACCCACCCGACGATTCGAACGAGGATGGGTCATAC
GTGAATAAAGAGAGATAGATAAGAACAAGGCTATATATTGGGCATGAAAA
ACGAACTAGCGAACGCGTATATATATTGTTGACACGGCGGGAGGAACGGC
ATACAGAACGGGTGGCGCGGGAATAAAGGGCGAACGCGAAGGGGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_d01.b1 MSMg01no057_d01.b1 CHROMAT_FILE:
MSMg01no057_d01.b1 PHD_FILE: MSMg01no057_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:03 2005
         (652 letters)



>mm_chr11_77014609_77015661
          Length = 1053

 Score =  845 bits (437), Expect = 0.0
 Identities = 471/489 (96%), Gaps = 15/489 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttttgc-cagcaccacccgtatgtaatcaaactatgacacgatacttggca 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaattcactttttgcatagcaccacccgtatgtaatcaaactatgacacgatacttggca 425

                                                                       
Query: 64  cagcaatgattttataatttgtcactggaaatgcaatcattttcagtgaagtggaagtta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagcaatgattttataatttgtcactggaaatgcaatcattttcagtgaagtggaagtta 365

                                                                       
Query: 124 ttttagtttctcagtatgaataaataagccagataaatcatattcctcaaagagctctcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttagtttctcagtatgaataaataagccagataaatcatattcctcaaagagctctcc 305

                                                                       
Query: 184 cctcaccaagagtttaaaaagctttttagggagtttatcatactctaatttatctttctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctcaccaagagtttaaaaagctttttagggagtttatcatactctaatttatctttctc 245

                                                                       
Query: 244 atgttaattagggagacatcaaaggtcttctatgtcttaactactattttttttaaaaaa 303
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||  
Sbjct: 244 atgttaattagggagacatcaaaggtcttctatgtcttaattactatttttttttaaa-- 187

                                                                       
Query: 304 aaattaatggagaagttggggatggcataacatggctgtaatcccagcacttgggaggct 363
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ---ttaatggagaagttggggatggcataacatggctgtaatcccagcacttgggaggct 130

                                                                       
Query: 364 gaggcaggaggatcaaaggttaaagtctgcctgtgctg--t-g------cttgtctccaa 414
           ||||||||||||||||||||||||||||||||||||||  | |      |||||||||||
Sbjct: 129 gaggcaggaggatcaaaggttaaagtctgcctgtgctgcatagtaagaccttgtctccaa 70

                                                                       
Query: 415 agataaagttaatgaagatgacaatgtttaaagagtcagttgcattattattattgttat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  agataaagttaatgaagatgacaatgtttaaagagtcagttgcattattattattgttat 10

                    
Query: 475 cattattat 483
           |||||||||
Sbjct: 9   cattattat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)