BAC Information

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BAC

Clone NameMSMg01-057H04
Chromosome11 (Build37)
Map Location 46,237,964 - 46,325,356
singlet/doubletdoublet
Overlap geneCrsp9, LOC100039730, Havcr2
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491
Downstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057H04.T7 (MSMg01no057_h04.b1)MSMg01-057H04.TJ (MSMg01no057_h04.g1)
ACCAG284601AG284602
length708712
length of high quality
(start - end)
379 (44 - 422)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no057_h04.b1 PHD_FILE: MSMg01no057_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:24 2005CHROMAT_FILE: MSMg01no057_h04.g1 PHD_FILE: MSMg01no057_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,237,964 - 46,238,337)(46,325,111 - 46,325,356)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCAAGTTCACAGAATACAAAATACAAGTATTTACATGTGAATCTAA
AATACTGTACACAGCTCCAAGGGAAAAAATCTAGAAGTCTAAGCCAGTGG
AGAGAGATATCCAGGTCATGAATTCAAAGTTTTAGTATTTCTGTCTTTCC
CAAAGTATTTTATAGGTGTGGCATGCTATCAATTAAAACCCTAACAAGAT
ATTTTTGCACACACAAAATTACATAAAATTTATCCACATGAGAAATAAAT
ACAACCACTCAGAAAAACCATAAAAAATAACTAAGCAGTAGGGATAAGCC
TATCCAATTTCAAGACACTGTATAGTGGTAGTCACCAAGGCTATGTGGCT
TAAGACACTGTATAGTGGTAGCCACCAAGGCTATGTGGCTTAAGACACTG
TATAGTGGTAGTCACCAAGGCTATGTGGCTTAAGACACTGTACAGTGGTA
GTCACCAAGGCTATGTGGCTTATGTGGAGGAATACACACAGTGTTGCTGG
AACATGACGGTATCTCTGAAGTACATGAGTGTAGAGATGGCTGGCATCCT
CCTTGTAAGATACTAAAACAATTTCAATGGGAGAAAATCTTTTCAGCATA
TGGTTCTAGATAGCACCAAACAAAGAACCATTAATTTTCTATTTAATTTG
CAACCCCN
TCGATGTAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGAAGTCTGTGGATGCTGAGGTATCCC
TATCCCTATGCAATGGAATTTCAGGCAATTGCGAGCCACCTGGGGTGAGC
GCTGGAAGCTGGGCTTGGGCTTATGCAGAAGCCTTACAGCTGAGACAGGA
CTCTATGCCTTTCAGCATTTCTTAATACAATAGGCACCCGAGGAAAGAAG
CATCAAATATAATCAAAGAGCAAATCAACGAAACTCTTTCAATACCAGCT
CCAGAAGACAAATCCACCATGCAATTTTTTTTACAAGCTGTCAGGGCTGA
CGGGCTCCTTCTGTATCACGTCCCCGGCACAGGAGTTGTCAAATCATATG
GCTGATATATCCTTAGAGGCCACGCTACGAAGAGAAAGGCTCGCCAAACT
AGTTCTAGAATCCTCGTCCAGCATCCGAAGCCCAGCTAGGTGTCCCAGCC
TACGACAACTGGAGCAAGGCGTGCTAGCGGTAGTAACATCTTCTCTTCTC
TTCTCTCTTCCCTCTCTCCCCTCTTCTCTTTCCCTCTTCTCCCTCTATCT
CCCTCCTTCTCTCCCTTCATCTCTTTCATCTCTTTCTCGCTACATCTCTC
CACATTCTCCTCATCTCCTCTTCCTCCCTCTCTATCCCCTCCATTCTCTT
TCCTCTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_h04.b1 MSMg01no057_h04.b1 CHROMAT_FILE:
MSMg01no057_h04.b1 PHD_FILE: MSMg01no057_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:24 2005
         (379 letters)



>mm_chr11_46237760_46238538
          Length = 779

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaagttcacagaatacaaaatacaagtatttacatgtgaatctaaaatactg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaagttcacagaatacaaaatacaagtatttacatgtgaatctaaaatactg 264

                                                                       
Query: 65  tacacagctccaagggaaaaaatctagaagtctaagccagtggagagagatatccaggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacacagctccaagggaaaaaatctagaagtctaagccagtggagagagatatccaggtc 324

                                                                       
Query: 125 atgaattcaaagttttagtatttctgtctttcccaaagtattttataggtgtggcatgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaattcaaagttttagtatttctgtctttcccaaagtattttataggtgtggcatgct 384

                                                                       
Query: 185 atcaattaaaaccctaacaagatatttttgcacacacaaaattacataaaatttatccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcaattaaaaccctaacaagatatttttgcacacacaaaattacataaaatttatccac 444

                                                                       
Query: 245 atgagaaataaatacaaccactcagaaaaaccataaaaaataactaagcagtagggataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgagaaataaatacaaccactcagaaaaaccataaaaaataactaagcagtagggataa 504

                                                                       
Query: 305 gcctatccaatttcaagacactgtatagtggtagtcaccaaggctatgtggcttaagaca 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 gcctatccaatttcaagacactgtacagtggtagtcaccaaggctatgtggcttaagaca 564

                         
Query: 365 ctgtatagtggtag 378
           ||||||||||||||
Sbjct: 565 ctgtatagtggtag 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no057_h04.g1 MSMg01no057_h04.g1 CHROMAT_FILE:
MSMg01no057_h04.g1 PHD_FILE: MSMg01no057_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:24 2005
         (246 letters)



>mm_chr11_46324911_46325556
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctgtggatgctgaggtatccctatccctatgcaatggaatttcaggcaattgcgagc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtctgtggatgctgaggtagccctatccctatgcaatggaatttcaggcaattgcgagc 387

                                                                       
Query: 61  cacctggggtgagcgctggaagctgggcttgggcttatgcagaagccttacagctgagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacctggggtgagcgctggaagctgggcttgggcttatgcagaagccttacagctgagac 327

                                                                       
Query: 121 aggactctatgcctttcagcatttcttaatacaataggcacccgaggaaagaagcatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggactctatgcctttcagcatttcttaatacaataggcacccgaggaaagaagcatcaa 267

                                                                       
Query: 181 atataatcaaagagcaaatcaacgaaactctttcaataccagctccagaagacaaatcca 240
           ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 ataaaatcaaagagcatttcaacgaaactctttcaataccagctccagaagacaaataca 207

                 
Query: 241 ccatgc 246
           ||||||
Sbjct: 206 ccatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)