BAC Information

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BAC

Clone NameMSMg01-057K22
Chromosome11 (Build37)
Map Location 42,410,613 - 42,411,248
singlet/doubletsinglet
Overlap geneGabrb2
Upstream geneGabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057K22.T7 (MSMg01no057_k22.b1)MSMg01-057K22.TJ (MSMg01no057_k22.g1)
ACCAG284779AG284780
length702699
length of high quality
(start - end)
638 (46 - 683)529 (72 - 600)
definitionCHROMAT_FILE: MSMg01no057_k22.b1 PHD_FILE: MSMg01no057_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:42 2005CHROMAT_FILE: MSMg01no057_k22.g1 PHD_FILE: MSMg01no057_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATGCGCGGAA
TTCCCTGTAATCTACCCTTTATGCAAAGTTTTCCTACCCATGACATCCTG
GGGTTTGCTGTAACTTTTCATCTTTAGTCCCTGGTTGATTAAGCAACAGC
CACTAATTTTTCAGAAAGCACCTTCAAAAAAATCTCCATTCTTGACACTG
ACATATCAGGAATATGAACTAGGATTTCCAATTCTCTACTTCATAAATAA
GTATAAATAGAAAAATACAGTTAAAGAATAATTTCCATAAAAATTCATGT
TCACTTTAAGTTAATTTTCACATAATTCCAGGAAGGGTCACTAGGCAGAT
TTACAACAAATTTCCATCAAATAGATAAGTATCTATAAATAAGCTAGCTT
TTCTAGATATTATGAGAACACCAAGGAAATAGGAATGTTATTACTCTAAT
TTTTTTTTACCCTTTCTTTTTTTTCAGGAATTACAACTGTCCTAACAATG
ACCACAATCAATACCCACCTCCGGGAGACTCTCCCTAAAATCCCCTATGT
CAAAGCCATTGACATGTACCTAATGGGGTGCTTTGTCTTCGTCTTTATGG
CCCTTCTGGAATACGCTTTGGTCAACTACATCTTCTTTGGGAGAGGACCC
CAGCGCCAAAAGAAAGCAGCTGAGAAAGCTGCTAATGCCAACAATGAGAA
AA
AATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTACTCCATTTTTAAT
AGGGTTATTTGATTCTCTTGAGTCTAATTTCTTGAGTTCTTTGTATATAT
TGGATATTAGCCCTACATCTACCAGATGTAGGATTGGTAAACATATGTTG
CTAATCTGTTGGTTGCCATTTTGTCCCATTGTCAGTGTCTTTTATCTTAC
AGAAGCTTTGCAATTTTATGAGGTCACATTTGTCTAATATTGATCTCAGA
GCATAAGCCATCGGTGTTCTGTTTAGGAAATTTCCCCCTGTATCCATGTG
TTTAAGGCTGAGGCCCACTTTCTCTTCTATTAGTTTCAGTGTTTCTGGTT
TTATGTGGAGGTTCTTGATCCACTTGCACTTGAGCTTTGTACAAGGAGAT
AAGAATGGATCAATTTGCATTCTTCTACATGTTGAACTCCAGTTGAACCA
GCACTATTTCTTGAAAATTCTGTCTTTTTCCCACTGGATGGTTTTAGCTC
CTTTGTCAAAGATCAAATGACCATAGGTCTGTGGGTTCATTTCTGGGTCT
TCAATACTGTTCCATTGATCTACCTGCCTGACTCTGGACCAATATCATAT
ATTTTTTTATACTTATTATACTGTAATACAGCTTTGAAGTCTGGGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_k22.b1 MSMg01no057_k22.b1 CHROMAT_FILE:
MSMg01no057_k22.b1 PHD_FILE: MSMg01no057_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:42 2005
         (638 letters)



>mm_chr11_42410411_42411448
          Length = 1038

 Score = 1168 bits (604), Expect = 0.0
 Identities = 628/636 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccctgtaatctaccctttatgcaaagttttcctacccatgacatcctggggtttg 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccctgtaatccaacctttatgcaaagttttcctacccatgacatcctggggtttg 262

                                                                       
Query: 63  ctgtaacttttcatctttagtccctggttgattaagcaacagccactaatttttcagaaa 122
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgtaacctttcatctttagtccctggttgattaagcaacagccactaatttttcagaaa 322

                                                                       
Query: 123 gcaccttcaaaaaaatctccattcttgacactgacatatcaggaatatgaactaggattt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaccttcaaaaaaatctccattcttgacactgacatatcaggaatatgaactaggattt 382

                                                                       
Query: 183 ccaattctctacttcataaataagtataaatagaaaaatacagttaaagaataatttcca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccaattctctacttcataaataagtataaatagaaaaatacagttaaagaataatttcca 442

                                                                       
Query: 243 taaaaattcatgttcactttaagttaattttcacataattccaggaagggtcactaggca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taaaaattcatgttcactttaagttaattttcacataattccaggaagggtcactaggca 502

                                                                       
Query: 303 gatttacaacaaatttccatcaaatagataagtatctataaataagctagcttttctaga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatttacaacaaatttccatcaaatagataagtatctataaataagctagcttttctaga 562

                                                                       
Query: 363 tattatgagaacaccaaggaaataggaatgttattactctaatttttttttaccctttct 422
           |||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 tattatgagaacagtaaggaaacaggaatgttattactctaatttttttttaccctttct 622

                                                                       
Query: 423 tttttttcaggaattacaactgtcctaacaatgaccacaatcaatacccacctccgggag 482
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 623 tttttttcaggaattacaactgtcctaacaatgaccacaatcaacacccacctccgggaa 682

                                                                       
Query: 483 actctccctaaaatcccctatgtcaaagccattgacatgtacctaatggggtgctttgtc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actctccctaaaatcccctatgtcaaagccattgacatgtacctaatggggtgctttgtc 742

                                                                       
Query: 543 ttcgtctttatggcccttctggaatacgctttggtcaactacatcttctttgggagagga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcgtctttatggcccttctggaatacgctttggtcaactacatcttctttgggagagga 802

                                               
Query: 603 ccccagcgccaaaagaaagcagctgagaaagctgct 638
           ||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccccagcgccaaaagaaagcagctgagaaagctgct 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)