BAC Information

Click to search

BAC

Clone NameMSMg01-057L16
Chromosome11 (Build37)
Map Location 118,819,909 - 118,975,237
singlet/doubletdoublet
Overlap geneEnpp7, Cbx2, Cbx8, Cbx4
Upstream geneSocs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
Downstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057L16.T7 (MSMg01no057_l16.b1)MSMg01-057L16.TJ (MSMg01no057_l16.g1)
ACCAG284815AG284816
length763704
length of high quality
(start - end)
232 (135 - 366)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no057_l16.b1 PHD_FILE: MSMg01no057_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:46 2005CHROMAT_FILE: MSMg01no057_l16.g1 PHD_FILE: MSMg01no057_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,975,006 - 118,975,237)(118,819,909 - 118,820,200)
sequence
TTGTGGGGGGTGTTTTTNGTTTTTGTTTTTGGCTCCTCTCCNCCGCCGCG
ATCCCCACCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGA
GGAGGCGCGGAATTCATTCAGGGTTACTACAAGTGTCTAAAGATAGGGGG
GCAGAGAAGTGGAGACCTCTCTACCTGGAAACAGAAGTCGCCATGATTTC
ACTTCTGCGATACCAGCGTAGGGATTGTTCCCTCTACTTAGGAAGCAGAG
GAGACCTGGCGTGGGAGCTACCTGAGCCTACCTTATGGAATAATAGGGCA
GGCCTTCTTGGCTCCTCTGAATCCTATCTCCTCCTGAATATGCTCTGGAA
TGATTTTGCTAAAACATCAAGCTAGGTCTGGTTATGTAGCTGGCTGGCAA
AGTTCTCGCTTAGCACGCAGAAGCCCTGGGTTTCATTCTCAGCGCTGCAT
AATCCAGGCATGGTGATACCTATAATCCCCCCCCTCAAGATGTGGAGGTA
GGAGGATCAGAAGTCCATGGCCATTGTGTTGGTTGGAATGAGACTGGCCC
ATAGGCATAGCATATTGGAATGCTTACGCCTCAGTTGGTGGAACTGTTTG
GCAAGGGCTGGTACGCGCCTCTTGTTGCAAGAGGTGTGCCAAATGTACTT
TTTTCCCCGACCTTTAACAAGTAAACCCCGCGGGCTATGCCCCCTCTTAT
TAACACCTATTCCCTTATCTCCCTTCTATCTCCTTTTTTTGCTACCCCAC
CCTTTTCTTGCCC
TCGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATCCCACATCCCGGATGGTGGAAGGAGA
GAACTGACTCCCACAGTTGTTCTCTGACATACTTCACATGCATGACATAA
CACACACACACACTAGAATACTTAAATAAAACATAGACTTGTCAGCCCCA
TAGACCATACCCCTCTTTCTTCTGGTGTCCAGAGCTCTCCCCTGGGCCAG
AGGCCACATACTCCTGGTTTTTATCTCACCAAGGTCACAAGTCAACAGCC
AAGCTGCAGACCCAGTTACTCCTCCTCTGAGGGTCCCTCCTTTGCTTTCC
CCTGGCCCTTCCTGCGTCCCCCTACTGCTGATCTCTAATATCAGGTACCC
CAAGCTTTCAGTGAACTTGTCAAAGCTGTCCTCTGTTCCAAGCCTGGAGG
TTAAGTATACTCTCTAGTACTCACCTGCCTCTGAACTCTCATCGACCCTA
GGAAGTTTCTCCCACTCAGATCCTGCTCGATACATCGCATAGAGTTCACG
GCGATATAGGTAGAACGAGCTGATACTGCGCTCTGGTCCCTCTTTCGCAC
TGTTAAAGGCGCTTCGCTCATAGCTGACTTGCTGTCTGGTGAGCAACACA
TGCTCCTGTACTAATCCCTAGATCTTTCTCGCGACCTCCGCTTGCAATGA
CTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_l16.b1 MSMg01no057_l16.b1 CHROMAT_FILE:
MSMg01no057_l16.b1 PHD_FILE: MSMg01no057_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:46 2005
         (232 letters)



>mm_chr11_118974806_118975437
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctaaagataggggggcagagaagtggagacctctctacctggaaacagaagtcgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtctaaagataggggggcagagaagtggagacctctctacctggaaacagaagtcgccat 373

                                                                       
Query: 61  gatttcacttctgcgataccagcgtagggattgttccctctacttaggaagcagaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gatttcacttctgcgataccagcgtagggattgttccctctacttaggaagcagaggaga 313

                                                                       
Query: 121 cctggcgtgggagctacctgagcctaccttatggaataatagggcaggccttcttggctc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 312 cctggcgtgggagccacctgagcctaccttatggaataatagggcaggccttcttggttc 253

                                                               
Query: 181 ctctgaatcctatctcctcctgaatatgctctggaatgattttgctaaaaca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctctgaatcctatctcctcctgaatatgctctggaatgattttgctaaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no057_l16.g1 MSMg01no057_l16.g1 CHROMAT_FILE:
MSMg01no057_l16.g1 PHD_FILE: MSMg01no057_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:46 2005
         (294 letters)



>mm_chr11_118819709_118820402
          Length = 694

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcccacatcccggatggtggaaggagagaactgactcccacagttgttctctgacatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccacatcccggatggtggaaggagagaactgactcccacagttgttctctgacatac 260

                                                                       
Query: 61  ttcacatgcatgacataacacacacacacactagaatacttaaataaaacatagacttgt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttcacatgcatgacataacacacacacacactagcatacttaaataaaacatagacttgt 320

                                                                       
Query: 121 cagccccatagaccatacccctctttcttctggtgtccagagctctcccctgggccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagccccatagaccatacccctctttcttctggtgtccagagctctcccctgggccagag 380

                                                                       
Query: 181 gccacatactcctggtttttatctcaccaaggtcacaagtcaacagccaagctgcagacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 gccacatactcctggtttttatctcaccaaggtcacaagtcaacagccaagctgtagacc 440

                                                               
Query: 241 cagttactcctcctctgagggtccctcctttgctttcccctggcccttcctg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttactcctcctctgagggtccctcctttgctttcccctggcccttcctg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)