BAC Information

Click to search

BAC

Clone NameMSMg01-058I04
Chromosome11 (Build37)
Map Location 70,793,803 - 70,793,992
singlet/doubletsinglet
Overlap geneC1qbp
Upstream geneRai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain
Downstream geneDhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058I04.T7 (MSMg01no058_i04.b1)MSMg01-058I04.TJ (MSMg01no058_i04.g1)
ACCAG285409AG285410
length735731
length of high quality
(start - end)
190 (127 - 316)218 (126 - 343)
definitionCHROMAT_FILE: MSMg01no058_i04.b1 PHD_FILE: MSMg01no058_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:46 2005CHROMAT_FILE: MSMg01no058_i04.g1 PHD_FILE: MSMg01no058_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGTACTGGAGCGCGG
AATTCTGACCATACTTAAAAAACCAGGGNGCAGCCGTGAACTTCGGCCAG
GCACGCACAGAGTACTTGTTTCGCACCTCCAGAATCCCCCAGAAGGGGGA
AGAGCCACTAGGTGTTTCAGTTCCTAGTTTGTGACTATGCAAAGTGAATC
TGCTCTGCAGCACGTGTGAGGCTTCCTGGAGCAGATGGCTTCCCTGGAAA
GACCCCCGGGACACCAGCCTGGCAGCTACATCCACAGCTGTAGTCATTTA
ATTTGCAGCACTTTGTATGATTTCTGTTTAAGGTGTTTAATGGCCGTGTC
GGCTTAGGCACCCAGGCTGCCTTTAAGTTCTGTTTAAGTCCTGGTGCAGC
TCGCTAGGATAGAGACATTGGCTAGGATGGAGACATTGTTTTAGCGTGCC
TTCACACCTGCCCTACCGCAGCAGGCCTCCCTCTTCCTGTGCTAATAGTG
TACCTTAGTGTGCTTCTACTTGCCGTTCTAGGATCACGGTCACTTTCAAC
ATCAACAACAGCATCCCCTTCCAACATTTGATGGGTGAGGAGGAGCCCCT
CACAGGGGCTAGAAGGCTTGAATAACTGGTAGGTTAAGCTTCGTAATCTC
TCCCAGCCCAGCCAGCTCTTTTCCCGTCTCTAGTAAGGAGCGAACTTTTT
TAAGGGTACAATTGTGGCCCTGCGACCCTTGGTTT
ATGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCGCAAAAATTCCAGGGCATCCAGAGCTTATATAATAGAG
GAGACTGGTTTCACAAAACCCCCAAAAGATAAAAACCAAAGCACTCAAAC
TTCTTAGTTGATAAAGGAAACATAATTTGTAAGACTGTATACTTATTCAT
GATTAAAAACACTAAACTAGAAACAGAAAGGAAATTTGCCAACTTGACAA
AGGACATTTACAAAATGGGTATGCATCAGCTTGTCTCTCATGGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTTTGTGTGTTTATGTGACACACACTATGGC
ATGACAGTATATATCCACCGCGACAGAACTCTCATCGTAGGAAGGTGTTT
ATTAGAGTGAAAAGGGTGCCATAAAAAGTCAAAGATATTGCATCCTTTTT
TTAATGCCCAAACCACATAAAGTCACATACCATACATAGGTCTATTTCTA
GTACAACAGCTTTGACCGTCTATGTTTATGTATACGACGAAACCCTTTTT
TTGACAGTGAGACTTTTTACCCCCTTAATTTTTCTTTCTCGTAAAAAATC
TCGCTAAACTGCCCATACGCGCCCCTCTACACCGCACCACTGCACTACCA
TACTATTTTTTTCTATTTGTTCAATTTCTTTTATCAGCCTCCCCAGTACT
TTTTTACTATTCTTTTTTACACTTGTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_i04.b1 MSMg01no058_i04.b1 CHROMAT_FILE:
MSMg01no058_i04.b1 PHD_FILE: MSMg01no058_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:46 2005
         (190 letters)



>mm_chr11_70793603_70794192
          Length = 590

 Score =  360 bits (186), Expect = e-104
 Identities = 189/190 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccagaatcccccagaagggggaagagccactaggtgtttcagttcctagtttgtgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctccagaatcccccagaagggggaagagccactaggtgtttcagttcctagtttgtgact 331

                                                                       
Query: 61  atgcaaagtgaatctgctctgcagcacgtgtgaggcttcctggagcagatggcttccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgcaaagtgaatctgctctgcagcacgtgtgaggcttcctggagcagatggcttccctg 271

                                                                       
Query: 121 gaaagacccccgggacaccagcctggcagctacatccacagctgtagtcatttaatttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 270 gaaagacccccgggacaccagcctggcagctacatccacagctgtagtcatttaatttgt 211

                     
Query: 181 agcactttgt 190
           ||||||||||
Sbjct: 210 agcactttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)