Query= MSMg01no059_d18.b1 MSMg01no059_d18.b1 CHROMAT_FILE:
MSMg01no059_d18.b1 PHD_FILE: MSMg01no059_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:41 2005
(583 letters)
>mm_chr11_84633807_84634789
Length = 983
Score = 623 bits (322), Expect = 0.0
Identities = 328/330 (99%)
Strand = Plus / Minus
Query: 1 ggtgggtagattcggaacatcacttctggagtgggcacaggagatggttagttccaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggtgggtagattcggaacatcacttctggagtgggcacaggagatggttagttccaggcc 271
Query: 61 agccataggagccaaggatacaaatgtccccaaaatacataattaagtacatccactgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agccataggagccaaggatacaaatgtccccaaaatacataattaagtacatccactgct 211
Query: 121 gctctagaggtcccatgttgattccagtcccagggagtcctacatcctcctctctctcgc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gctctagaggacccatgttgattccagtcccagggagtcctacatcctcctctctctcgc 151
Query: 181 tgggccaccaggcacacatgtggtgcacagccacacggacaaacaatatgcccgcacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgggccaccaggcacacatgtggtgcacagccacacggacaaacaatatgcccgcacatg 91
Query: 241 tgaaagaatttttaaaaataagttggagccaggtatactaatactattgcacacctttaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tgaaagaattttgaaaaataagttggagccaggtatactaatactattgcacacctttaa 31
Query: 301 tcccaacatttgagaagcagaagcagggag 330
||||||||||||||||||||||||||||||
Sbjct: 30 tcccaacatttgagaagcagaagcagggag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d18.g1 MSMg01no059_d18.g1 CHROMAT_FILE:
MSMg01no059_d18.g1 PHD_FILE: MSMg01no059_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:41 2005
(371 letters)
>mm_chr11_84495995_84496765
Length = 771
Score = 621 bits (321), Expect = 0.0
Identities = 350/371 (94%), Gaps = 18/371 (4%)
Strand = Plus / Plus
Query: 1 tcctcccccaaggagggtcagcaacctggggacactgccagtgcccagtccagggaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tcctcccccaaggagggtcagcaacctggggacactgccagtgcccagtccagggaacct 278
Query: 61 taggggaaagctgtgagaagcagtgcacagagcacacacacacacacacacacacacaca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taggggaaagctgtgagaagcagtgcacagagcacacacacacacacacacacacacac- 337
Query: 121 cacacacacacacacacttgagtgccctcctccccaccccccatcagtcatttgtactac 180
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 -----------------ttgagtgccctcctccccaccccccatcagtcatttgtactac 380
Query: 181 aggaagagaacctaatcccacgtctgaaatactatgtggtggaggctttacagtattaga 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaagagaacctaatcccaagtctgaaatactatgtggtggaggctttacagtattaga 440
Query: 241 aggcaaacagtgtcaggtgtaattaggagaaaaatttgtcctgctctcgacttgggggag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaaacagtggcaggtgtaattaggagaaaaatttgtcctgctctcgacttgggggag 500
Query: 301 tgaagggaaaatccggcattgcaatctccctgtgtttacccagcgcgcgcacgcacgccg 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgaagggaaaatccggcattgcaatctccctgtgtttacccagcgtgcgcacgcacgccg 560
Query: 361 gggagcgggtg 371
|||||||||||
Sbjct: 561 gggagcgggtg 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
