Query= MSMg01no059_m06.b1 MSMg01no059_m06.b1 CHROMAT_FILE:
MSMg01no059_m06.b1 PHD_FILE: MSMg01no059_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:21 2005
(661 letters)
>mm_chr11_42483972_42485036
Length = 1065
Score = 613 bits (317), Expect = e-179
Identities = 347/359 (96%), Gaps = 6/359 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctgcaat-ttccaccaaggcctttctacaagactttaatgcacacagttttac 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgcaatctt-caccaaggcctttctacaagactttaatgcacacagttttac 262
Query: 63 tattagattttactttaatttttgaacaatttattaaaatgtatataaaacagtgaagga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tattagattttactttaatttttgaacaatttattaaaatgtatataaaacagtgaagga 322
Query: 123 aaatgtttttaaaaatctgtgttttcatataagtcctaagtaggccttgttccataaatt 182
|||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatgttttttaaagtctgcgttttcatataagtcctaagtaggccttgttccataaatt 382
Query: 183 actacaatttatatgagtatttgaaaggccaggagctaagacagaa----cccagaccat 238
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 actacaatttatatgagtatttgaaaggccaggagctaagacagaaagaacccagaccat 442
Query: 239 ttaaataagttttatgtacacttccgggggaagctttgctgtaaatgtcatgaaaggaaa 298
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ttaaataagttttatgtacactgccgggggaagctttggtgtaaatgtcatgaaaggaaa 502
Query: 299 aggaagatggctcaaatacttagctcacacttccaaatattgaaaacaagctaagtttc 357
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggaagatggctcaaatacttaactcacacttccaaatattgaaaacaagctaagtttc 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1065
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1055
Effective search space: 686805
Effective search space used: 686805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_m06.g1 MSMg01no059_m06.g1 CHROMAT_FILE:
MSMg01no059_m06.g1 PHD_FILE: MSMg01no059_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:21 2005
(584 letters)
>mm_chr11_42554184_42555167
Length = 984
Score = 1025 bits (530), Expect = 0.0
Identities = 564/584 (96%), Gaps = 14/584 (2%)
Strand = Plus / Minus
Query: 1 agaaggtcccagaataacagctacaatgtaagtgagttgactaaagcaccacaaagacag 60
|||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct: 826 agaaggtcacagaataacagctgcaatgtaagtgagttgact--------------acag 781
Query: 61 caatggacttgcttacaatattgttctcttccagtttgtgagatagaatttatatataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 caatggacttgcttacaatattgttctcttccagtttgtgagatagaatttatatataaa 721
Query: 121 atgaaaaccattaaatcttatgcttttgtacactctgaccctattgatttttctccacaa 180
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 720 atgaaaaccattaaatctgatgcttttgtacactctgaccatattgatttttctccacaa 661
Query: 181 ttgatcttattttgtgtggagcatttactatttactcgatacttatttaggaggaacata 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttgatcttattttgtgtggaacatttactatttactcgatacttatttaggaggaacata 601
Query: 241 gatttctacattcattgtaactattcttgttctttattcttttatgttgtgttccagcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gatttctacattcattgtaactattcttgttctttattcttttatgttgtgttccagcca 541
Query: 301 tttctacataaaagcatttagtaacttttcctgtgagacctggaattttctctaatagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tttctacataaaagcatttagtaacttttcctgtgagacctggaattttctctaatagag 481
Query: 361 atctcttttcaatgcgtttgtttatgaatagaaccacttgtgtgcagcttttattgaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atctcttttcaatgcgtttgtttatgaatagaaccacttgtgtgcagcttttattgaaaa 421
Query: 421 tacctgctggattctgtgcagttccatgtagagagagatgggagacatgcaagtatgtag 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 420 tacctgctggattctgtgcagttccatgtggagagagatgggagacatgcaagtatgtag 361
Query: 481 tgctaagcaggaattgagaatatcattacacacagggtcctatatctatttgtttcttag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgctaagcaggaattgagaatatcattacacacagggtcctatatctatttgtttcttag 301
Query: 541 gactttcagggattgaaaggctttttcatctgtaatgactccca 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gactttcagggattgaaaggctttttcatctgtaatgactccca 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
