Query= MSMg01no060_f06.b1 MSMg01no060_f06.b1 CHROMAT_FILE:
MSMg01no060_f06.b1 PHD_FILE: MSMg01no060_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:02 2005
(676 letters)
>mm_chr11_86044808_86045883
Length = 1076
Score = 1236 bits (639), Expect = 0.0
Identities = 666/679 (98%), Gaps = 8/679 (1%)
Strand = Plus / Plus
Query: 5 gaattcattacatttggtcttcatcctaccattctacagcaaactaacctccacatgcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattcattacatttggtcttcatcctaccattctacagcaaactaacctccacatgcta 258
Query: 65 tgtgcagcccttgggtgaacactagtcctcattttacttcctcattcaggttcatccaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtgcagcccttgggtgaacactagtcctcattttacttcctcattcaggttcatccaac 318
Query: 125 agagctcagacagcagacctcactaagtcctctttgaaatctcctttggtatctacaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agagctcagacagcagacctcactaagtcctctttgaaatctcctttggtatctacaacc 378
Query: 185 cctatctccttgatatcctctatactccattgctgggaacctatctaatgtccaaactaa 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 379 cctatctccttgatatcctctatactccattgctgagaacctatctaatgtccaaactaa 438
Query: 245 tttatgccattgtccaaaccctctaagttagccttcctctctctcaaatttgattcacta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttatgccattgtccaaaccctctaagttagccttcctctctctcaaatttgattcacta 498
Query: 305 aagtaaacaccaaaggactacctcagtcccatgatatgatacgaatcatctgaaggccct 364
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 499 aagtaaacaccaaag-actacctcagtcccatgatatgatacaaatcatctgaaggccct 557
Query: 365 agcatctcactgctgcctagtcactggacttccatggatgggctctgacccactcactat 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcatctcactgctgcctattcactggacttccatggatgggctctgacccactcactat 617
Query: 425 caggaagttactactggagaggc-------cgtgccgcttacctagcgtctttgtgttcg 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618 caggaagttactactggagaggctcggccccgtgccgcttacctagcgtctttgtgttcg 677
Query: 478 ccaggagagcttcctcgtaagacaggatatagtagagcaccagaagctgcgctgtgatac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccaggagagcttcctcgtaagacaggatatagtagagcaccagaagctgcgctgtgatac 737
Query: 538 tgaagcgctgggtaaggcggacgctgtctccctgaggtgatacaaaaacggtgaaaacac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgaagcgctgggtaaggcggacgctgtctccctgaggtgatacaaaaacggtgaaaacac 797
Query: 598 tgaacagcaagagcgtaagagagatcatccagtgctgctgcatcagcccagctagaccga 657
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgaacagcaagcgcataagagagatcatccagtgctgctgcatcagcccagctagaccga 857
Query: 658 gagcaggactgctgggttc 676
|||||||||||||||||||
Sbjct: 858 gagcaggactgctgggttc 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_f06.g1 MSMg01no060_f06.g1 CHROMAT_FILE:
MSMg01no060_f06.g1 PHD_FILE: MSMg01no060_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:02 2005
(304 letters)
>mm_chr11_86145948_86146651
Length = 704
Score = 565 bits (292), Expect = e-165
Identities = 304/312 (97%), Gaps = 8/312 (2%)
Strand = Plus / Minus
Query: 1 tcagttctattactttctacttt-aaaaaaaaattggtttttaaggcagggtttctctgt 59
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcagttctattactttctactttaaaaaaaaaattggtttttaaggcagggtttctctgt 607
Query: 60 gtagcgctggctgtcctagaactcactccataaacctggccttgatctcacagagatagg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gtagcgctggctgtcctagaactcactccataaacctggccttgatctcacagagatagg 547
Query: 120 ttctactgccttttgactgctggggtcacaggtgt-------cattggcttttccgtttt 172
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 546 ttctactgccttttgactgctggggtcacaggtgtgtgccaccattggcttttccgtttt 487
Query: 173 attacgattttctactgattttaggtctctatataacttttactataatttaatttcttt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attacgattttctactgattttaggtctctatataacttttactataatttaatttcttt 427
Query: 233 atgccttttcctgaaaaatattaaatagggctagtgtgtgtatatatagtatgtgtatgt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgccttttcctgaaaaatattaaatagggctagtgtgtgtatatatagtatgtgtatgt 367
Query: 293 attatatattgg 304
||||||||||||
Sbjct: 366 attatatattgg 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
