Query= MSMg01no060_f23.b1 MSMg01no060_f23.b1 CHROMAT_FILE:
MSMg01no060_f23.b1 PHD_FILE: MSMg01no060_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:05 2005
(556 letters)
>mm_chr11_109285553_109286507
Length = 955
Score = 919 bits (475), Expect = 0.0
Identities = 508/527 (96%), Gaps = 14/527 (2%)
Strand = Plus / Plus
Query: 5 gaattcacctagatgaccgtaaactgcaaagcctactgtgcatcctctggctatacggga 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcacctagatgat-gtaaactgcaaagcctactgtgcatcctctggctacacggga 263
Query: 65 ccatgaataatttctgattattggcaggactatttgtctgcaatgatatggattagttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccatgaataatttctgattattggcaggactatttgtctgcaatgatatggattagttat 323
Query: 125 tctgaaattaccctcagtgcatattgtaccacagagcagttaaatgcagaagtaaattat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgaaattaccctcagtgcatattgtaccacagagcagttaaatgcagaagtaaattat 383
Query: 185 gaatagtgggggacagacttttcattagtatggaagggagtgcacacagaaaaatggaaa 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatagtgggagacagacttttcattagtatggaagggagtgcacacagaaaaatggaaa 443
Query: 245 gcaggaaccttgtggtgttagactgcaatcagagtgattggtaggaattcccagtgtagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaggaaccttgtggtgttagactgcaatcagagtgattggtaggaattcccagtgtagg 503
Query: 305 tgtcctgtgactacttagaaaaaattgcttgtttagaagcatgctctggagtatttacac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcctgtgactacttagaaaaaattgcttgtttagaagcatgctctggagtatttacac 563
Query: 365 taaaggggcatcatgtttacagctgattaaaaatgtcccgggagaaaaaaatgatcaggt 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 taaaggggcatcatgtctacagctgattaaaaatgtcccgggagaaaaaaatggtcaggt 623
Query: 425 tgttggggagtgacctcatgggaggagaaagaggatcagagggggtcctggggaaatata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgttggggagtgacctcatgggaggagaaagaggatcagagggggtcctggggaaatata 683
Query: 485 accgaagtacattatatacgtatgaaaatttgaaagaatatacatgt 531
||||||||| |||||||||||||||||||||||||
Sbjct: 684 accgaagta-------------tgaaaatttgaaagaatatacatgt 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_f23.g1 MSMg01no060_f23.g1 CHROMAT_FILE:
MSMg01no060_f23.g1 PHD_FILE: MSMg01no060_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:05 2005
(537 letters)
>mm_chr11_109438620_109439556
Length = 937
Score = 774 bits (400), Expect = 0.0
Identities = 415/422 (98%), Gaps = 5/422 (1%)
Strand = Plus / Minus
Query: 1 ttctcttcttcctctccctaattgctgcatgtagcttgcttagctcaggaacaacagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttctcttcttcctctccctaattgctgcatgtagcttgcttagctcaggaacaacagaag 363
Query: 61 agaacaaagaaaatgacctcagaccttccttacctccatcttatgctgcaactgtagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agaacaaagaaaatgacctcagaccttccttacctccatcttatgctgcaactgtagcaa 303
Query: 121 ggcccagcacgtctgcagcctccacggtgccaggtgagctttggtgagccctcaacctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggcccagcacgtctgcagcctccacggtgccaggtgagctttggtgagccctcaacctcc 243
Query: 181 aggcccaatacaggaggatatagcccaa----atccatccatccatcctgcctgcctgcc 236
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 242 aggcccaatacaggaggatatagcccaaatccatccatccatccatcctgcctgcctgcc 183
Query: 237 tgcctgcctgcctgcctgttcacagggtctcactgtgtagaccaggttggcctcaaactc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgcctgcctgcctgcctgttcacagggtctcactgtgtagaccaggttggcctcaaactc 123
Query: 297 acaaagatccacctgcctctcctccctgtgctggaactaaaggcacaaaataaacaaata 356
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 122 acaaagatccacctgcctctcctccctgtgctggaactaaaggcacgaaataaacaaata 63
Query: 357 gccaacgactcttt-acttattgaagcattccgacaggaggtggctgagacccgtctgtc 415
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62 gccaacgactctttaacttattgaagcattctgacaggaggtggctgagacccgtctgtc 3
Query: 416 tc 417
||
Sbjct: 2 tc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
