BAC Information

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BAC

Clone NameMSMg01-060H08
Chromosome11 (Build37)
Map Location 19,799,794 - 19,800,146
singlet/doubletsinglet
Overlap geneLOC665868
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1
Downstream geneLOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060H08.T7 (MSMg01no060_h08.b1)MSMg01-060H08.TJ (MSMg01no060_h08.g1)
ACCAG286897AG286898
length788717
length of high quality
(start - end)
97 (140 - 236)345 (69 - 413)
definitionCHROMAT_FILE: MSMg01no060_h08.b1 PHD_FILE: MSMg01no060_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:11 2005CHROMAT_FILE: MSMg01no060_h08.g1 PHD_FILE: MSMg01no060_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTGCTTCCTATTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGA
AATCCGCGGAATTCAGCCCAGGTTCCCACACATGCTAGGNAAGCCCGNCC
TGGTTTGTTTTTCTTTCTTTCTTACTGGGATCTCTGGCTGGCCTCATAAT
GGAAACTTGCAGCAATCCTTCTGCCTCTGCTTCCTCAGTTCCGGGATTAC
AGGTGACGTCACAATACTTGGAGGGAGGGGAGAGTACTTGCCAGACCTGA
TAGCACTGGACCTTCATTTCAGGCCTCAGGGGGAACAGGCAAGCGGATTT
CCATGAGTCTCAGGCCAACTTATATTCATTATTTCACATATACTCATATC
CACCCACTCCTCTCCTCACTTTCCCTTTCCATGACCCCATCCCGATCCAT
AGTAACCTGTCATAACGCTGATTCCAGGTAACCCCACCCCCCACATCCGA
ATACCACTGTACCCTCTTTATGATGCCACAAAATATCACTGTACCGGCTA
CTCGACCTAACAAAAGTTGTTTTGAACGTACCTTCTTGCCTTCCGTCCCG
TGATATCCTGCCCCACCCCATACCTTCTCATCCTGCAAAAAGACCATGAC
CCCCCTTGAACCTTACCAACCCCTTGCCCACTTTCCCCATCTTCCGAATT
TTCCCCTTTCTCCCCTCTCTCATCCACTATTCGCCCCACAGCCCTCTCTA
TCTTTTTTTCACCTATCCCCTCCCTTCCACACTTCACTTTCGACCGCGTG
CCATACTACGTTCGACGCATTCAACATATCTCTTTATT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGGGTGGCTTGCTTCCTTCCCCAAGCCTGAG
CCAAATGCCCCCTCTCCAGATGGCTGCCTGCTTATGGGGAGGGAAAACCA
TCTGCTTTGCTTCGAGTGTCAGGAGCACAACTCTACACTGAATGAGAAGA
CTTTTAACTCAGGGAAAGTAGATGTGAGAAGTGCATTTTCACGAGCAGTG
TTGCACCAGAGGAAAAGGAAGGGGAGTCTAGGACCTTCTTAAGCCGAGAG
TCCTCAAGACTGGCAGCAAGCCATGCTCCAAAGCTCTCCCATCCCCCGGG
CCCACCCTGTATAGAGGGATATTCCAGGCAGCTTTACCTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGCCACACCATACTCCCTCCCTCTAT
ATCTCAACCCCCAACTTCCTATCCCTCCTTTCCCTCACCACCCCGTAATC
TATTTTTTTTCACTAACCCATCTCCTCTTCTCTTTAACCCCATACCCCTT
CTCCCCCTTATTCCCCCCTCCCTTCCCCCCTCTTTATCCCTTCCCTTTTC
CATGCCATTTTCCTCCTTTCCCCCCCCCCCTGTCTTCCCCCCTCTTTATT
TCCCCTCCCCTCCCCCCCCTTTTTTCCTCTTTTTCTCCCCACCCTCCCAT
TCCCTCTTTTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_h08.g1 MSMg01no060_h08.g1 CHROMAT_FILE:
MSMg01no060_h08.g1 PHD_FILE: MSMg01no060_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:11 2005
         (345 letters)



>mm_chr11_19799603_19800346
          Length = 744

 Score =  623 bits (322), Expect = 0.0
 Identities = 343/354 (96%), Gaps = 10/354 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtggcttgcttccttccccaagcctgagccaaatgccccctctccagatggctgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 192 ttgggtggcttgcttccttccccaagcctgagccaaatgccccctcaccagatggctgcc 251

                                                                       
Query: 61  tgcttatggggagggaaaaccatctgctttgcttcgagtgtcaggagcacaactctacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgcttatggggagggaaaaccatctgctttgcttcgagtgtcaggagcacaactctacac 311

                                                                       
Query: 121 tgaatgagaagactt---t-ta-----actcagggaaagtagatgtgagaagtgcatttt 171
           |||||||||||||||   | ||     |||||||||||||||||||||||||||||||||
Sbjct: 312 tgaatgagaagacttcagtgtagagaaactcagggaaagtagatgtgagaagtgcatttt 371

                                                                       
Query: 172 cacgagcagtgttgcaccagaggaaaaggaaggggagtctaggaccttcttaagccgaga 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cacgagcagtgttgcaccagaggaaaaggaaggggagtctaggaccttcttaagccgaga 431

                                                                       
Query: 232 gtcctcaagactggcagcaagccatgctccaaagctctcccatcccccgggcccaccctg 291
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 gtcctcaagactggcagcaagccatgctccaaagctctcccatcccc-gggcccaccctg 490

                                                                 
Query: 292 tatagagggatattccaggcagctttacctgtgtgtgtgtgtgtgtgtgtgtgt 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatagagggatattccaggcagctttacctgtgtgtgtgtgtgtgtgtgtgtgt 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 744
Length adjustment: 9
Effective length of query: 336
Effective length of database: 735
Effective search space:   246960
Effective search space used:   246960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)