BAC Information

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BAC

Clone NameMSMg01-061O07
Chromosome11 (Build37)
Map Location 75,356,454 - 75,470,182
singlet/doubletdoublet
Overlap geneSlc43a2, Pitpna, LOC654359, Pps, Myo1c
Upstream geneGarnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1
Downstream geneCrk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061O07.T7 (MSMg01no061_o07.b1)MSMg01-061O07.TJ (MSMg01no061_o07.g1)
ACCAG287996AG287997
length717716
length of high quality
(start - end)
675 (43 - 717)241 (429 - 669)
definitionCHROMAT_FILE: MSMg01no061_o07.b1 PHD_FILE: MSMg01no061_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:00 2005CHROMAT_FILE: MSMg01no061_o07.g1 PHD_FILE: MSMg01no061_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,356,454 - 75,357,123)(75,469,942 - 75,470,182)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAAT
TCTTTGACTGGTCCCTGGTTTCTACAAATACTGAAAACATCTGCATTAAG
GGGTCTGGGTGAACCAGCCACATCTTGTCAGTTGCCAGAGCCTTAAGGCA
CTCACTGTGAGCTTTGGCTTTCTTGGTGGTAAAATCCCAAAGGCGAGTCT
GTGTCTCCAATCTTTGGGGAAGCCTACCTGTTCTCTTTCTTTATACACAC
AGAGAATGTCACTAACGGCACGGTCGGGGGCAGCGCAGAGCCGGAACCCG
AGGAGTTGAGCCTGGTGAATGGCTGGCTCAGCTGTAAGGCCCAGGATGAG
ATTCTGAATTTGGCCTTCACCGTGGGCTCCTTCCTGCTCAGTGCCATCAC
CCTGCCTCTGGGCATCATCATGGACAAGTATGGTCCAAGGAAGCTCAGGC
TGCTGGGCAGGTCAGTGTGGGATCCGTGAGGGCTGGGTCAGCATAAGTGA
TGCCTTGAGCTGCATTCCCTGCTGTAGGGAACCTTGGACTGTGGTAGCAG
TGCACCATGGGACTCCCTAAATTCCCACCGTGGACAGGATTACTACTGTA
TCTGGCACAGAATTAGTAGATCTCGTGACCCTGCTGGTTTCCACATGTGA
ACCACAGGACCCTAACTTGTCTTTAATATTAGTTTTGGGGGCCATTTAAA
GATGGCTCATCTGGTAN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCGAACAGGGAGGGGCCATCTCTCCAA
CTCCCATCCACCCCAAATTCCCAGAAGTAGAAGTTGTTTAGGGATCAAGC
CAGAGCTCTCGTCCTAGGAGAGGGTTTCCCCATGGGCCACCACCTCAGCT
GGACTTGATGCCCACCCCAGAAGCGGGGGGCCTGCCCTCCCTCAACTGGA
GCCACTCCCTCCTCTCCAGCTGCTAGGATTCCCCCCCCCGCCCCCCTCCC
CGCGCAGGTCCTCCACCGTTGATAAGCCTCAAGAGGCGGAGGGTTCTCCC
AGGGGAAACCCAGCTGCCACCCAAGGGTGGGGTAGGTACAGGCTTATCTA
GACCCTCAAGCCGCGTCTAAACCATAGGTTTCCTTTCAAAGAGGGCCTGC
AGATCTAGAAAATGCTGGGGTAGGGGGGTGTCAAGGAAGAGGAAGGTACT
GGGAGCCGCTGTAAATTCCAGGGAGGTCACCAAGTCTCCCCTGACCCTGG
TTTCTAGCCCTAGTTGCTCAGTTCTCTGCTTCTCCGTCACCCCTAAAGTC
CAGGGCCTGTCTCCCTCAGACCTGCCCACCCCTGACCCACCCAGCCCGAA
GCTGCTGCCAAACACCACCGCAGCCAACGCCCCCTGGTCCTCAAGTGGGA
GGGGTCTTAGCCATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_o07.b1 MSMg01no061_o07.b1 CHROMAT_FILE:
MSMg01no061_o07.b1 PHD_FILE: MSMg01no061_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:00 2005
         (675 letters)



>mm_chr11_75356250_75357324
          Length = 1075

 Score = 1226 bits (634), Expect = 0.0
 Identities = 661/670 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgactggtccctggtttctacaaatactgaaaacatctgcattaaggggtct 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgactggtctctggtttctacaaatactgaaaacatctgcattaaggggtct 264

                                                                       
Query: 65  gggtgaaccagccacatcttgtcagttgccagagccttaaggcactcactgtgagctttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gggtgaaccagccacatcttgtcagttgccagagccttaaggcactcacagtgagctttg 324

                                                                       
Query: 125 gctttcttggtggtaaaatcccaaaggcgagtctgtgtctccaatctttggggaagccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctttcttggtggtaaaatcccaaaggcgagtctgtgtctccaatctttggggaagccta 384

                                                                       
Query: 185 cctgttctctttctttatacacacagagaatgtcactaacggcacggtcgggggcagcgc 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 cctgttctctttctttatacacacagagaatgtcactaacagcacggtcgggggcagcgc 444

                                                                       
Query: 245 agagccggaacccgaggagttgagcctggtgaatggctggctcagctgtaaggcccagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagccggaacccgaggagttgagcctggtgaatggctggctcagctgtaaggcccagga 504

                                                                       
Query: 305 tgagattctgaatttggccttcaccgtgggctccttcctgctcagtgccatcaccctgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagattctgaatttggccttcaccgtgggctccttcctgctcagtgccatcaccctgcc 564

                                                                       
Query: 365 tctgggcatcatcatggacaagtatggtccaaggaagctcaggctgctgggcaggtcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgggcatcatcatggacaagtatggtccaaggaagctcaggctgctgggcaggtcagt 624

                                                                       
Query: 425 gtgggatccgtgagggctgggtcagcataagtgatgccttgagctgcattccctgctgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgggatccgtgagggctgggtcagcataagtgatgccttgagctgcattccctgctgta 684

                                                                       
Query: 485 gggaaccttggactgtggtagcagtgcaccatgggactccctaaattcccaccgtggaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 gggaaccttggactgtggtagcagtgcaccatgggactccctaaattcccaccctggaca 744

                                                                       
Query: 545 ggattactactgtatctggcacagaattagtagatctcgtgaccctgctggtttccacat 604
           |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 745 ggattactaccgtatctggcacagaattagtagatatcgtgaccctgctgatttccacat 804

                                                                       
Query: 605 gtgaaccacaggaccctaacttgtctttaatattagttttgggggccatttaaagatggc 664
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcgagccacaggaccctaacttgtctttaatattagttttgggggccatttaaagatggc 864

                     
Query: 665 tcatctggta 674
           ||||||||||
Sbjct: 865 tcatctggta 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no061_o07.g1 MSMg01no061_o07.g1 CHROMAT_FILE:
MSMg01no061_o07.g1 PHD_FILE: MSMg01no061_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:00 2005
         (241 letters)



>mm_chr11_75469742_75470382
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctttcaaagagggcctgcagatctagaaaatgctggggtaggggggtgtcaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcctttcaaagagggcctgcagatctagaaaatgctggggtaggggggtgtcaaggaa 382

                                                                       
Query: 61  gaggaaggtactgggagccgctgtaaattccagggaggtcaccaagtctcccctgaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaaggtactgggagccgctgtaaattccagggaggtcaccaagtctcccctgaccct 322

                                                                       
Query: 121 ggtttctagccctagttgctcagttctctgcttctccgtcacccctaaagtccagggcct 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ggtttctagccctagttgctcagttctctgcttctccgtcacccctcaagtccagggcct 262

                                                                       
Query: 181 gtctccctcagacctgcccacccctgacccacccagcccgaagctgctgccaaacaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctccctcagacctgcccacccctgacccacccagcccgaagctgctgccaaacaccac 202

            
Query: 241 c 241
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)