BAC Information

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BAC

Clone NameMSMg01-061P04
Chromosome11 (Build37)
Map Location 51,340,768 - 51,341,035
singlet/doubletsinglet
Overlap geneCol23a1
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P04.T7 (MSMg01no061_p04.b1)MSMg01-061P04.TJ (MSMg01no061_p04.g1)
ACCAG288038AG288039
length803721
length of high quality
(start - end)
268 (47 - 314)338 (73 - 410)
definitionCHROMAT_FILE: MSMg01no061_p04.b1 PHD_FILE: MSMg01no061_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005CHROMAT_FILE: MSMg01no061_p04.g1 PHD_FILE: MSMg01no061_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCCGCGGATTCT
TAAGCTATTCTCGCAAGGGGCTTGAAGGGGTAGGGAGATAACCATGTGTG
GGGCACAGTGTCAGGTAGCTGTCAGTGACCTTAAGCAGGCCGAACCTGAG
CTGGGGACAGAAAGACAGCCAGTAGCAGTGCATGTCTCCCCATCTGTAGC
TTCCAGAATCTTCTAGAAGCAAGAATGAGCTGAGAGCATCCTGCAGATCC
TGTGTAAAGGACATTGTCAGTCCCTGGCTTGGTCGTAATGGTTCTGACAC
CTCCTGCCAGCCCTCTGTGACCACATGTTCTCTGTCTTAGGCCGGGATTG
ACAGATGGCTGACGCGCGTGCCTGTATTACCTTGCTGTCTCTGATGAAAG
TCTAATGCCCCCCCCCCCCTTGTCCTGCTGACCAAAGAAGGTGGTAGTCC
TTCTGTATCTTTCTTGTTTTCTGTCTTCCCCTCCCCCATCCCCACACTCC
TGTATGAATCTATTTATTTGCATTCTCTTTAAATGATAATCCCCCTGGTA
CATCTGCTGTTTAAATGTTTATACGTATTTTTCTCTACTTTACATTGTCT
AACTCTCTACGTTTTTGCATTATACGTTTATTTACCATTGACTACATAAT
ACCTGTGTAATGCCTTTTATATACCATATTAAGACTTACTCTATACGGCC
ACTAGTTCAACTTCTCCTTTCCCTTCGCGCACCTGTTTATATTATTTGTT
ATGTTACTTTCCACTTTTGATATTTTTCTCTTCGTCATTCTACGTTCGTA
TTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACATGGTGGCTCAC
AACCATCTAATGAATCTGGTACCCTCTTCTGCTGTGTCTGAAGAGAACGA
CAGTGTACTCATATACATAAACAAATCTTTTTTAAAAGATTAAAAGAAAA
CACCAGAATACAGACAGACAGACAGACAGACAGATAGGTAGATAGAGCTG
AAGAGATGGCTCAGTGGTTAGGAGCACTTGTTGATTTATAAGAGGACCTG
GTTTTGAGTCCCAGCACCTGCATGATGGTTCATAACCATCTATAACTTCA
GTTCCAGATCTGAGATCCTTTTCTGGACTCCTGGGTCACCAGACACATAC
ATACATGCCTACACACGCTCATGCATGTAAACATTGAGCATAATTTACTG
GGCTTCGGCACATACCTTTAACAGCACTTATTTGGAAGGCAGAGGTAGGT
AGATCTCTACAAGGTGAGTCCAGCCTGGTCTACAGAGTAAGCACTGGGAC
TCCCAAGGCTACACAAAAAAAACCCTGTCTTGAGAAAATTTTAAAGGATA
AGAAATTTTTTGAAAAAGACTGGATCCAGTATGATGGCACATGCCTTTAA
TCCCATTACTCCGGAAGCATAGCCAGGCACATCTGCGATGTCAAAGCCAG
CCTGGTCTATAGAGTCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p04.b1 MSMg01no061_p04.b1 CHROMAT_FILE:
MSMg01no061_p04.b1 PHD_FILE: MSMg01no061_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:04 2005
         (268 letters)



>mm_chr11_51340568_51341235
          Length = 668

 Score =  458 bits (237), Expect = e-133
 Identities = 261/271 (96%), Gaps = 6/271 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttaagct---attctcgcaaggggcttgaaggggtagggagataaccatgtgtgggg 57
           ||||||||||   |  || ||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 201 ttcttaagctacca--ct-gcaaggggcttgaaggggtagggggataaccatgtgtggag 257

                                                                       
Query: 58  cacagtgtcaggtagctgtcagtgaccttaagcaggccgaacctgagctggggacagaaa 117
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cacagtgtcaggtagctgccagtgaccttaagcaggccgaacctgagctggggacagaaa 317

                                                                       
Query: 118 gacagccagtagcagtgcatgtctccccatctgtagcttccagaatcttctagaagcaag 177
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 318 gacagccagtagcagtgcatgtgtccccatctgtagcttccagaatcttctagaagcaag 377

                                                                       
Query: 178 aatgagctgagagcatcctgcagatcctgtgtaaaggacattgtcagtccctggcttggt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatgagctgagagcatcctgcagatcctgtgtaaaggacattgtcagtccctggcttggt 437

                                          
Query: 238 cgtaatggttctgacacctcctgccagccct 268
           |||||||||||||||||||||||||||||||
Sbjct: 438 cgtaatggttctgacacctcctgccagccct 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)