BAC Information

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BAC

Clone NameMSMg01-062B02
Chromosome11 (Build37)
Map Location 58,465,295 - 58,465,565
singlet/doubletsinglet
Overlap geneTrim58
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323
Downstream geneOlfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062B02.T7 (MSMg01no062_b02.b1)MSMg01-062B02.TJ (MSMg01no062_b02.g1)
ACCAG288129AG288130
length1,1051,154
length of high quality
(start - end)
274 (124 - 397)514 (112 - 625)
definitionCHROMAT_FILE: MSMg01no062_b02.b1 PHD_FILE: MSMg01no062_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:16 2005CHROMAT_FILE: MSMg01no062_b02.g1 PHD_FILE: MSMg01no062_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTCTCCCTNNCTTCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTAGAAAAAGGCTACTTTTAAGCCTCCTTATTTCTAAGC
TAAGCTTTGTGGCTTTCCTCTGCACCCAGGAGACTGAGTTATTGGGGGTT
ATTGGGATAACCTTGGCTACTTGTCAGAAACAAGTAGAATTAATAATCCC
AAATCTCTCTGTATGGAGGGTTGAGGGTGCAAGAATAATATTTAATTCTA
GCTTTTCACTGTGAAGATGCACCAAGGAAAAAATGAAGCCTCAGGCAGTA
GTGTTTGATGAGCCTGCTGCCTTTCCTGAGTCATCTACTCCATTGAGTTC
CTCAGAATGTGAACCACCCGGGACCTACTCATCAGTCCCACTGGTTTAAT
CTTCTCATGTGCAGGCCTGCAGAGCAGGCGTTGGTGTGGTTTAGGGAAGC
AGGGCACAGCCACGCCTCCCGATCCATCAAGGACTTCCCTGAAGCACAGC
ACTTCTGGATGGGTTTAGTATTCCTCACTTCTGGCAGCAGCAGCAAGATC
AAAGATACCCCTGGGCGTCCAGTTTCCAGGCGCTGCTTCTGTCATGGGAG
GCAAGATAAGAGGAGTCGTGTCGCAGACGAAGAAGTAGGGCCTGAGAACG
CCGGAGAAGAGATGGTTGAATGTGTAGATGTAAGACCCATTTGTGACATT
GTAGAAGGAGATTTCACCAGCTTCGTATTCCAAAAAGATCCCGATGCGGC
GAGGTCGCTCATCTTGGAGCACAGGCTCCGAGGTAGAGGACAGGACCCTG
TACTCGTTCCCCCTCAGCAGCCACATGGTCCAAAACGCGTTCTCTTGGGA
ACGGGTGGTCTCTCCCTTTTCTCAGCATTGATCCTCGTCATAACCTTAGC
CCCCTCTTCTGCTCTTTTCCCCCATGATGATTTCTCATTTATTGCCTCCC
CGTAAATAAATCCCTGCATGCCTCGTTATGCTATGGTTTGTGTCTTAACG
CTTCTATGTTTTGGTGGGAATTTCTCCTCCAAACTTCGTGATTCCGGTAC
CCTGGCTCAGTTTCGTAATTTTAAATATTAGTTTTGTTTTTTATCTTGGG
CCCTT
CAGATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCTATAAAACCCCTTTNAAAGANGAGCTAACACCAATACTCC
TATTCAATTTGTTTCACCAAACAGAAATAAGAGGAAAAAATTTATGAGAC
CTCAATTACCCCATTTCCCAAACCACACAAAGACTCAACAAAGAAAGAGA
ATTACTGATCATTTCCCTTATGAACATATATGCAAAAATACTCAATAAAA
TTCTCACAAACTGAATCCTAGAATATATCACAAAGATCATCCATCATGAT
CAAGTAGGCTTTATCCCAGAGACACTAGGTTGGTTCAATATTAGAAAATC
AGTCAATGTAATTCATCAAATAAAGAAAAATAAACCCCCTTGAGCATCTC
ATGAGATCCCAGAAAAGTTTTTGACAAAGTCTAACACCCCTTTTATGGTA
ATAATATTGGAGAAACTAGGGATAAAAGGAGACATACCTCAACAAAATAA
AGGCAATTTGCAGCAAGCCTATAGCTAACATATTAAATGAAGAGAGATTC
ATACCAACTCCACTAAAATCTGGAACAAAACAAGGCTGTCCCTTCTCTCC
ATATATATTCAATATATTAATTGATGTTCTAGTTAGGGCAGTAAGACAGC
TAAAGGAGGAGGTAGGTCCCAGAGCCTGACACTATTACTGAGGCTATGGA
GTGCTCACATAAAGGACCCTATCATGAACACCCTCCAGAAGACCCACCAA
GCAGTCTGAAAGAGTCAGATACCGATATTTGCACCCCACCAATGGACAGA
AGCACCTGACCCCTGTTGTTGAAATTAAGAAAAGCCTTGAAAGAAGCTTA
GGGAGAAGGGGTGACCCCTGTAGGAGGGACCCAGTCAGTCTTCAATTTAA
TCCTGGGACCCCCCCCAAGAATCTCTCCAAACCCTAGGGATTCCCCACAA
TGGAATAGGCAAAACCACCCACGCTGTAATTGGAGGCCCCTCCGCATCAC
CACCTTACCCTTAAAAGGCATATGGCCCCAGGTCCCGGGGGTTTCTCTTT
CTCCAAGAAACGATAGGGCCCCCCTAAACCCTTTTCACAGAAAAACAAGG
GCTAAGAGCCCTCCCTAAAAAACACTTTTAATAAAAGTTTTCGTGAGGTG
GGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_b02.b1 MSMg01no062_b02.b1 CHROMAT_FILE:
MSMg01no062_b02.b1 PHD_FILE: MSMg01no062_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:16 2005
         (274 letters)



>mm_chr11_58465095_58465768
          Length = 674

 Score =  485 bits (251), Expect = e-142
 Identities = 266/271 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccaggagactgagttattgggggttattgggataaccttggctacttgtcagaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acccaggagactgagttattgggggttattgggataaccttggctacttgtcagaaacaa 412

                                                                       
Query: 61  gtagaattaataatcccaaatctctctgtatggagggttgagggtgcaagaataatattt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 411 gtagaattaataatcctaaatctctctgtatggagggttgagggtgcaagaataacattt 352

                                                                       
Query: 121 aattctagcttttcactgtgaagatgcaccaaggaaaaaatgaagcctcaggcagtagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 351 aattctagcttttcactgtgaagatgcaccaaggaaaaaatgaagcctcgggcagtagtg 292

                                                                       
Query: 181 tttgatgagcctgctgcctttcctgagtcatctactccattgagttcctcagaatgtgaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 291 tttgatgagcctgctgcctttcctgagtcatctactccactgagttcctcagaatgtgaa 232

                                          
Query: 241 ccacccgggacctactcatcagtcccactgg 271
           |||||||||||| ||||||||||||||||||
Sbjct: 231 ccacccgggacccactcatcagtcccactgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)