BAC Information

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BAC

Clone NameMSMg01-062B14
Chromosome11 (Build37)
Map Location 44,632,037 - 44,754,709
singlet/doubletdoublet
Overlap geneEbf1
Upstream geneAdra1b, Il12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510, LOC633082, Clint1, Lsm11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062B14.T7 (MSMg01no062_b14.b1)MSMg01-062B14.TJ (MSMg01no062_b14.g1)
ACCAG288153AG288154
length1,1691,152
length of high quality
(start - end)		762 (126 - 887)711 (130 - 840)
definitionCHROMAT_FILE: MSMg01no062_b14.b1 PHD_FILE: MSMg01no062_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:20 2005CHROMAT_FILE: MSMg01no062_b14.g1 PHD_FILE: MSMg01no062_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,632,037 - 44,632,794)(44,753,999 - 44,754,709)
sequence
CCAGTTTTTTTNNNACCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGGACAGGGCTGGGCCTATAAAGTCCACATTGGTGAC
ACCAATGCCTTGCAAGCTCTTTTATTTTTTACCTTACCAGATTAGGCGCA
TTCGATTTTAGTTGAAAGTGATTAGAAACGTATCTGCTTTGAAGGGTTAA
TGGTCTGTATTCTTTCATTGTCTAAGGACTCTTTCCTTTTCCTGTCTGCC
TTTGCTCTTCTTTTCTCTCTCTCTACATCATTGTGCAGAAGAGATTGAAA
TGCCTAATTTATTTTTCCACCTTTTATAAACTCCTCATCCTCTCTGGCTC
CATACCACGAAGAACACATTTCAGGAGAAGTGATTGTGTGTGTCAGTAGT
TCCTAAAGTCTGAGTTGGCTGATGCGAGGCCTATATTTTTAGGACTTGGA
AGCTGCCCTCAACAGCTGGCTAGGGAGCCTTGGCTTTGGATATGTCTGCA
GCAAAGAACAGTTTCCATATCTATCTCAAGGGATCACAGGTGGGGCTTCT
GCCCACTTGTCCTCAGAATCTCAGTTGGCTGGGTAACTCCCTCCATGACA
ACGGCTTAACTTCTCACCTCAGGAAGAAACTGGCTTAGGGAATGCCTCTG
AGAAGGAGACATGCTCTTCTTTAGTCACTGACCTGAGCAGTTGACATGCA
TTCTTTAACATCTGGGTTTCCTTCTGAAGGTTATGTATGATGCTTGGATA
TTGAGCAAAGCAATACATTTACAACCCTAAGGGAACATAGTAACACTCTG
TAAATAGTAGTTAATACTAGCTAATACCGATGTTATCAAGTTCCACTTTT
AGGGTTTTGTATTTAAAGTACAATCAGAATATTCTGCCCAGCGACTGCTC
AATGAATCACGAGAGGACTCAACAACATCTCACCTAANTTTCTATATTTT
CAGTTGGCTAAAGGGAGATTTGGCATTTTTTGAAATCTTGGTCCATTTTA
ATGTTAAAATTTATTGGTTTTACCGGCGGAAAAATTAAGAAATGGTAAGG
GGGGTCCAATTTGTAAAAAAAATTTTCTTTTTCGAAACTTTTAGGGAGGT
CCAAATTTTTGAAAAAAAACTTAATGTGGTTGGGGCCTCATTGGAAGAAA
CCTTGTTTGTTAAAAATGG

CTATTTTTTTNTNNTACGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTATAACTGCTGACTAAATA
ACCATTACAGTGCAGTCACTGTTAGTTACATGGTAACCCACATTAACTTT
ATAATAAGCACTGTATTCTTCACGATATCCATTGGAAGATGAGACAGAAT
TGTAGGCTTTCATTTCTTTTTAATGCCACCCAAAATAAGAATAAAGTAAG
ATCATTGTAAAGGCAGAAGGCTCCGGAACATAATACTGGTGAGTTAAGCT
GTAGATCCCATTAAAGAGATGCTTAAATCCATTAAGTATAATTAGACATG
ACACTCCAGAATTCACAAACAGACATTCTAATAAAATCATTAAAAATTTT
TGGTAGGTTCTTTAAAAATGGGAGACTCTTATAATATAGGCTGTTATATT
ATATTAAAGCTTTATAATTTTATATGAGCTCTTCTCTTTTATGTAAAAGC
CTATGGAACTTTATAAGAACAGTTCTGTTTAAATCAATGAGTCTTAAACA
ACAATGTACTTCATGTTACATGTATTTAATAATGTAATAAACTATTCTGA
GTGGTATAGAATAAAATGACAAGGACTTCATTCTGATTGGCTGAGAAACC
TTGGGATATAGGGTCTCATTTTCTTACAGCATCGCAGGGAGCACATTTAC
ACTCAAATCTCCATTTACATGCATATTATTTAATTTGGGCAATTATGAAG
TCTTGAGAGCACTTTCATTACCACTTGAACCCTTAGAAGACTCCATACTA
TGAATGCATCATATGTAAGACTAGGCAGAGGCATTCTGAGAAGAAAGCAG
TAGGAACAACTTTAATTGAACACTTATATTAGTGAATTANATTAGGTCTG
TTTTTAAATGAGCTACCCTTAATTAGCTGCTGTTGGGAAATTGGAAGGAA
TATATTTTACATTTTACTCATTACACTGAGCATCCGTGGACAACTGGNCC
TTGTTTTTGCTTTTTTACTTACAACTGAACCCCAATTTCCTTAAAAAAAA
TTTTCCTTTTATTTGAATTCCAANAAAAAACCCCTTAAAAAGGTTTAAAG
GCCAAAATTAAAAATTTCTTTGTAAAAAACTGGGTGAAAGGTTTTGGGGT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_b14.b1 MSMg01no062_b14.b1 CHROMAT_FILE:
MSMg01no062_b14.b1 PHD_FILE: MSMg01no062_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:20 2005
         (762 letters)



>mm_chr11_44631837_44632998
          Length = 1162

 Score = 1427 bits (738), Expect = 0.0
 Identities = 753/758 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttaccttaccagattaggcgcattcgattttagttgaaagtgattagaaacgtatct 60
           |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttaccttaagagattaggcacattcgattttagttgaaagtgattagaaacgtatct 260

                                                                       
Query: 61  gctttgaagggttaatggtctgtattctttcattgtctaaggactctttccttttcctgt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgaagggttaatggtctgtattctttcattgtctaaggactctttccttttcctgt 320

                                                                       
Query: 121 ctgcctttgctcttcttttctctctctctacatcattgtgcagaagagattgaaatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctttgctcttcttttctctctctctacatcattgtgcagaagagattgaaatgcct 380

                                                                       
Query: 181 aatttatttttccaccttttataaactcctcatcctctctggctccataccacgaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttatttttccaccttttataaactcctcatcctctctggctccataccacgaagaac 440

                                                                       
Query: 241 acatttcaggagaagtgattgtgtgtgtcagtagttcctaaagtctgagttggctgatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatttcaggagaagtgattgtgtgtgtcagtagttcctaaagtctgagttggctgatgc 500

                                                                       
Query: 301 gaggcctatatttttaggacttggaagctgccctcaacagctggctagggagccttggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcctatatttttaggacttggaagctgccctcaacagctggctagggagccttggct 560

                                                                       
Query: 361 ttggatatgtctgcagcaaagaacagtttccatatctatctcaagggatcacaggtgggg 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggatatgtccgcagcaaagaacagtttccatatctatctcaagggatcacaggtgggg 620

                                                                       
Query: 421 cttctgcccacttgtcctcagaatctcagttggctgggtaactccctccatgacaacggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctgcccacttgtcctcagaatctcagttggctgggtaactccctccatgacaacggc 680

                                                                       
Query: 481 ttaacttctcacctcaggaagaaactggcttagggaatgcctctgagaaggagacatgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaacttctcacctcaggaagaaactggcttagggaatgcctctgagaaggagacatgct 740

                                                                       
Query: 541 cttctttagtcactgacctgagcagttgacatgcattctttaacatctgggtttccttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttctttagtcactgacctgagcagttgacatgcattctttaacatctgggtttccttct 800

                                                                       
Query: 601 gaaggttatgtatgatgcttggatattgagcaaagcaatacatttacaaccctaagggaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaggttatgtatgatgcttggatattgagcaaagcaatacatttacaaccctaagggaa 860

                                                                       
Query: 661 catagtaacactctgtaaatagtagttaatactagctaataccgatgttatcaagttcca 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 catagtaacactctgtaaatagtagttaatactagctaataccgatgttatcaagttcca 920

                                                 
Query: 721 cttttagggttttgtatttaaagtacaatcagaatatt 758
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cttttagggttttgtatttaaagtacaatcagaatatt 958


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space:   866304
Effective search space used:   866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no062_b14.g1 MSMg01no062_b14.g1 CHROMAT_FILE:
MSMg01no062_b14.g1 PHD_FILE: MSMg01no062_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:20 2005
         (711 letters)



>mm_chr11_44753799_44754909
          Length = 1111

 Score = 1344 bits (695), Expect = 0.0
 Identities = 707/711 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtaacccacattaactttataataagcactgtattcttcacgatatccattggaaga 60
           |||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 911 atggtaattcacattaactttataataagcactgtactcttcactatatccattggaaga 852

                                                                       
Query: 61  tgagacagaattgtaggctttcatttctttttaatgccacccaaaataagaataaagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tgagacagaattgtaggctttcatttctttttaatgccacccaaaataagaataaagtaa 792

                                                                       
Query: 121 gatcattgtaaaggcagaaggctccggaacataatactggtgagttaagctgtagatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gatcattgtaaaggcagaaggctccggaacataatactggtgagttaagctgtagatccc 732

                                                                       
Query: 181 attaaagagatgcttaaatccattaagtataattagacatgacactccagaattcacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 attaaagagatgcttaaatccattaagtataattagacatgacactccagaattcacaaa 672

                                                                       
Query: 241 cagacattctaataaaatcattaaaaatttttggtaggttctttaaaaatgggagactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cagacattctaataaaatcattaaaaatttttggtaggttctttaaaaatgggagactct 612

                                                                       
Query: 301 tataatataggctgttatattatattaaagctttataattttatatgagctcttctcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tataatataggctgttatattatattaaagctttataattttatatgagctcttctcttt 552

                                                                       
Query: 361 tatgtaaaagcctatggaactttataagaacagttctgtttaaatcaatgagtcttaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tatgtaaaagcctatggaactttataagaacagttctgtttaaatcaatgagtcttaaac 492

                                                                       
Query: 421 aacaatgtacttcatgttacatgtatttaataatgtaataaactattctgagtggtatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aacaatgtacttcatgttacatgtatttaataatgtaataaactattctgagtggtatag 432

                                                                       
Query: 481 aataaaatgacaaggacttcattctgattggctgagaaaccttgggatatagggtctcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aataaaatgacaaggacttcattctgattggctgagaaaccttgggatatagggtctcat 372

                                                                       
Query: 541 tttcttacagcatcgcagggagcacatttacactcaaatctccatttacatgcatattat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttcttacagcatcgcagggagcacatttacactcaaatctccatttacatgcatattat 312

                                                                       
Query: 601 ttaatttgggcaattatgaagtcttgagagcactttcattaccacttgaacccttagaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttaatttgggcaattatgaagtcttgagagcactttcattaccacttgaacccttagaag 252

                                                              
Query: 661 actccatactatgaatgcatcatatgtaagactaggcagaggcattctgag 711
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actccatactatgaatgcatcatatgtaagactaggcagaggcattctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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