BAC Information

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BAC

Clone NameMSMg01-062K03
Chromosome11 (Build37)
Map Location 8,816,607 - 8,817,273
singlet/doubletsinglet
Overlap genePkd1l1
Upstream geneLOC665380, Tns3, LOC638720, LOC624800
Downstream geneHus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K03.T7 (MSMg01no062_k03.b1)MSMg01-062K03.TJ (MSMg01no062_k03.g1)
ACCAG288562AG288563
length1,1391,174
length of high quality
(start - end)		661 (84 - 744)714 (125 - 838)
definitionCHROMAT_FILE: MSMg01no062_k03.b1 PHD_FILE: MSMg01no062_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:25 2005CHROMAT_FILE: MSMg01no062_k03.g1 PHD_FILE: MSMg01no062_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCACTTATTTTTTTACAATGGNCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCCAGTGGGAATGGCTCCTTTAAAATCTTTTTTTCTTTTTCTT
TTTTCTTTTTTGCTCTTAATGATTTATTTTTGACCGAAAATGGATTTTTC
TCACAATATATTCTGATTATAGTTGACATTCCCCAACTCCTCCCAGATCC
TCGCCACCTATTTCACACCTTAGCTCTCTTTTGTTGGAAACAGGTAACTT
TAAAAAGAAAAAGAAAGAAAGAAAAGAACAAGAAAAAAATAAAAACAAAA
AAATCTGAATAGGGCAAAACAAACTAATGAACAGATATAAAAAAGTCAAA
GAAAGCCGGGTGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCA
GAGTCAGGTGGATTTCTGAGTCTACAAAGTGAGTTCCAGGACAGCCAGGG
CTACACAGAGAAACCCTGTCTCGAAAACCAAAAAAAAAAAAAAGAAAAAA
AAAAGCACAAGAAATACATATATATGCAGAGACAGAGAAATATACATGTG
CACATAGAGATATCCTATAAAACCACGAAACCAGAAACCATATGTAATCA
AAAGACCTATAAAGTTAAAAAAAAACAGGAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAAAGAAAGGAAGGAAGAGAGAGAAGAGAGAGAGAGAAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGTTATT
NTTTATTNTTTTTATTTATTTTATTTTTTTTTTTTTATATATTAATTATT
ATTTTTTTTTTTATTATTTGTTTTTATTTTTTATTATTTATATTTTATAT
TAATTTTTTATTTTTTTATTTTTTTTTTATATTTTTTTATTATTTTATTT
TTTTTTTTTTATTTATATTTATTTATAAATTTTAAATTTTATTTATTTTT
GTTTTTTTTTATATTTATTTTTTTTAATTTTTTATATTTTATTATATTTA
TTTTTTATTTTTTTTTGTAATTTTTTTATTTATATTTTTTACTTTTTATT
ATATATTATTATTTATATTATTATTATTTATTATTATATTTTTTTTTTTT
TTATTTTAATATTTATTTATACTTTTTATTATCTTTCTT

NCCCTTTTTTTNTNTTAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAAGTCCAGAGAACATAGT
GAGTTAAAGTTGGTATTACTTAACTTGTACCACATGCCCATCGGTCACCT
TAAAGCCTGGAGGAAGTAAGATCAGAGATGTTTTCCTCTCTGGATGGTGG
GATGCAAAGAAAGGTTTGGAAGATGTTTTAATTACTGCTCCAATGTAGTT
GCCTGTTACAGGTCTGTTTAAGTTGCATCATCTTTATTTAATTTAACCAG
TCACTTGTGTTTAAGAATTTAGCAATTTCTTCTAGATTTTCCAGGCTTGG
GGATAATGCATTTTCAGATTGTTCCCTAATGATCCTGTGGACTCCACGGA
AGTCTGTTTAACGACTTCTTCATCCCTAACTTGATCCTGTGGACTCCACG
GAAGTCTGCATGACAGCTTCTTCATCCCTAACTGGTTACTTTTGGATGTC
TCTGCCCTTGACTCTTTTGTCTAGGGTTTTGTCAGTTTCACTCCTTTTAC
TCATTGGTTTCTGTATTTTTCTTTGTCTCTATTCCATTAATTTCTACTTT
AGTCTTTAGCGTTTCTTGTCATCTGTAGCATTTAGGTTTGGCTTCTTGGT
TTATTAGAAAATTGAAGTGTATTGTTAGATTATTTGAGAGATCTCTGATT
TTTTAATAAAGCAGCTATGACTATTACAGGCAGTACTTTAGACACAGCTA
AGGGGTTCTGGCATTGTTTTATTATTTCTATTTGATCCTAGAAATTTAAA
TTTTTCCTTTCTAATTTCTCCGATGACCCATTTATCCAAAAATGTATTAT
TCAGTCTCTAAATAATCATACAATTTTTGGGCTGCCTCTTGCTATTGATT
TATAGTTTTCTTTTGTGAGATTATCCCAAAATAATCTCCCAAAATACAAA
TAATATTTGTAATATCTTCACAAGGTACAAAAGTATTTTTGATTTTATGT
CACTTGGAAAATTTTAGAACCTTACCTCTTAATCTCATTTCGAAAAAAAA
TGTTTTCCCGGGCTGTCCTGAAAAAAAGGATTTTCTCCATTTTATTTGGG
GGAGAGAATTATTTACATGGAGAACTTCTTCCCCCGCGGTTTTTTTTTTT
TTTCTTCAAAATTTTTCTTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k03.b1 MSMg01no062_k03.b1 CHROMAT_FILE:
MSMg01no062_k03.b1 PHD_FILE: MSMg01no062_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:25 2005
         (661 letters)



>mm_chr11_8816416_8817476
          Length = 1061

 Score = 1172 bits (606), Expect = 0.0
 Identities = 648/668 (97%), Gaps = 11/668 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttttttctttttcttttttcttttttgctcttaatgatttatttttgaccgaaaatgg 60
           |||||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||
Sbjct: 192 ctttttttctttttcttttttctttttttcttttaatgatttatttttgattgaaaatgg 251

                                                                       
Query: 61  atttttctcacaatatattctgattatagttgacattccccaactcctcccagatcctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atttttctcacaatatattctgattatagttgacattccccaactcctcccagatcctcg 311

                                                                       
Query: 121 ccacctatttcacaccttagctctcttttgttggaaacaggtaactttaaaaagaaaaag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccacctatttcacaccctagctctcttttgttggaaacaggtaactttaaaaagaaaaag 371

                                                                       
Query: 181 aaagaaagaaaagaacaagaaaaaaataaaaacaaaaaaatctgaatagggcaaaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaagaaagaaaagaacaagaaaaaaataaaaacaaaaaaatctgaatagggcaaaacaaa 431

                                                                       
Query: 241 ctaatgaacagatataaaaaagtcaaagaaagccgggtgtggtggcacacgcctttaatc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 432 ctaatgaacagatataaaaaagtcaaagaaagccgggtgtggtggcgcacgcctttagtc 491

                                                                       
Query: 301 ccagcacttgggaggcagagtcaggtggatttctgagtctacaaagtgagttccaggaca 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccagcacttgggaggcagaggcaggtggatttctgagtctacaaagtgagttccaggaca 551

                                                                       
Query: 361 gccagggctacacagagaaaccctgtctcgaaaaccaaaaaaaaaa----------aaaa 410
           ||||||||||||||||||||||||||||||||||||||||||||||          ||||
Sbjct: 552 gccagggctacacagagaaaccctgtctcgaaaaccaaaaaaaaaagaaaaaaaaaaaaa 611

                                                                       
Query: 411 gaaaaaaaaaagcacaagaaatacatatatatgcagagacagagaaatatacatgtgcac 470
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaaaaaaaaa-gcacaagaaatacatatatatgcagagacagagaaatatacatgtgcac 670

                                                                       
Query: 471 atagagatatcctataaaaccacgaaaccagaaaccatatgtaatcaaaagacctataaa 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atagagatatcctataaaaccacgaaaccagaaaccatatgtaatcaaaagacctataaa 730

                                                                       
Query: 531 gttaaaaaaaaacaggaagaaagaaagaaagaaagaaagaaagaaaaagaaaggaaggaa 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gttaaaaaaaaacaggaagaaagaaagaaagaaagaaagaaagaaaaagaaaggaaggaa 790

                                                                       
Query: 591 gagagagaagagagagagagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 650
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 791 gagagagaagagagagagagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaag 850

                   
Query: 651 gaaggaag 658
           ||||||||
Sbjct: 851 gaaggaag 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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