BAC Information

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BAC

Clone NameMSMg01-063F07
Chromosome11 (Build37)
Map Location 81,752,086 - 81,752,394
singlet/doubletsinglet
Overlap geneAccn1
Upstream gene1700071K01Rik, 5530401A14Rik
Downstream geneCcl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063F07.T7 (MSMg01no063_f07.b1)MSMg01-063F07.TJ (MSMg01no063_f07.g1)
ACCAG289096AG289097
length739746
length of high quality
(start - end)
313 (102 - 414)283 (131 - 413)
definitionCHROMAT_FILE: MSMg01no063_f07.b1 PHD_FILE: MSMg01no063_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:39 2005CHROMAT_FILE: MSMg01no063_f07.g1 PHD_FILE: MSMg01no063_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNCCCCCCCCNNGGGAT
GTANNCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCGCGGAATTCTCACTGACCCCTCACATGACCAGTGAGGTCATGGTGGT
TGGAAGGAAAGGAATCAGTCTACAGCCGAGAGAAAATAGGGGGAGGCAAG
GACCCTCCCCTTCTCATGCATCTGCATGCCCATGAGCAGAAATTCGGTCC
TCTGGTCTTATCATACCTCAGTGGAGGTAGAGACTCTGAGGTAAAGATGA
TGTTGCTGCTCAAAGCATGTGTTGAAAGCAAGCCAGCTTTCTGGAAAGCA
TGCATCCCTGCCAGGGGACACAGGCCTTCCCACATCATTCCATGCTCTGA
GTTGAAGCAAAACTATGTTGTCCGTGAAACTCAAGCCAGAGGGGCAGGGG
CAGGATGGGGAATATCTTACATATGACTGCACAGAAGCCACAGTGTTAGT
GAGAACTCACAGCTATAGTGCAAAGACAACCACCCAATGCCCACTAATGA
AGACACATGTTTTTTCTATCACATCTAAATCATTTGTTCTCCAAGGCCAA
CAAAACAACATCGAGGGAGAAGAGTCAGAAACCTTCAAATTAGACATAAG
GACTGACAGTCTTATGGCTGTCACTCTTAAGGAATGGATCCCCTACCAGG
GAATCTGTTGCCCTTCTTCCGCCTTTTCCCTCTCTTTCT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNCCCCNNNNCCCACC
CCACTCAACTATGATATGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAAATGTCCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAA
AAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGCTTCCTCAGAAAATTGGACATAGTACTACCAGA
GGATCCTGCAATATCTCTTCTGGGCACACACCCAGAAGATGCCCCACCTG
GTAAGAAGGACACATGCTCCACTATGTTCAAAGAAACCTTATTTATAATA
GCCCGAACCTGGAAAGAACCCAGATGCCCCTCACCAGAGGAATGCATACA
GAAAATGTGGTACATCTATACCATGGAGTACTATTCAGCTATTATAAAGA
TTGAATTTATGAAATTCCTAGCCAAATGTATGGACCTGTAACTGCATCAC
CTTGAACTGAGCTACAAATTTCACCAAGGAACCTCACACAAATACGGACC
TCACTGGCTACCTGTAAATTAGTCCCAAACCCTACCACACCCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_f07.b1 MSMg01no063_f07.b1 CHROMAT_FILE:
MSMg01no063_f07.b1 PHD_FILE: MSMg01no063_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:39 2005
         (313 letters)



>mm_chr11_81751882_81752595
          Length = 714

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattct-cactgacccctcacatgaccagtgaggtcatggtggttggaaggaaaggaa 63
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 ggaattctccactgacccctcacatgaccagtaaggtcatggtggttggaaggaaaggaa 264

                                                                       
Query: 64  tcagtctacagccgagagaaaatagggggaggcaaggaccctccccttctcatgcatctg 123
           |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tcagtctacagcagagagaatataggaggaggcaaggaccctccccttctcatgcatctg 324

                                                                       
Query: 124 catgcccatgagcagaaattcggtcctctggtcttatcatacctcagtggaggtagagac 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgcccatgagcagaaattcagtcctctggtcttatcatacctcagtggaggtagagac 384

                                                                       
Query: 184 tctgaggtaaagatgatgttgctgctcaaagcatgtgttgaaagcaagccagctttctgg 243
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 385 tctgaggtaaagatgatgttgctgctcaaagcgtgtgctgaaagcaagccagctttctgg 444

                                                                       
Query: 244 aaagcatgcatccctgccaggggacacaggccttcccacatcattccatgctctgagttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagcatgcatccctgccaggggacacaggccttcccacatcattccatgctctgagttg 504

                    
Query: 304 aagcaaaac 312
           |||||||||
Sbjct: 505 aagcaaaac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)