BAC Information

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BAC

Clone NameMSMg01-063I08
Chromosome11 (Build37)
Map Location 10,675,490 - 10,675,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063I08.T7 (MSMg01no063_i08.b1)MSMg01-063I08.TJ (MSMg01no063_i08.g1)
ACCAG289242AG289243
length1,406688
length of high quality
(start - end)
---292 (56 - 347)
definitionCHROMAT_FILE: MSMg01no063_i08.b1 PHD_FILE: MSMg01no063_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:55 2005CHROMAT_FILE: MSMg01no063_i08.g1 PHD_FILE: MSMg01no063_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNTTTTTTNNNNNNNNTTTGTTTTTTGTTTNNGGTN
NTTGTGNTGTGTNNTTGTNGGGTNCGGTTGGGTTNTTTGTTGTTGCGAGG
TTGTGTTGTTTATNNTTTTCTGGGGTGGTGCATTTCTGTCATTTCCTTTC
GTCTATCTCCTCCTCGTTCGCGATATCCCCCCCGCTGTATTATATTCGCG
CTTACTCGTCGCGCTGACACGGGCTCAGGCTGACAGACTAGCATGAGACA
TGCACTCCGCTGGCGACTCACAGGAGAGAAACATCGTGAGAAAATGCGGT
ATGTACGCCGCCATTTACCCCGAGTCGACCACACATCACCGAAACAACGG
ATGAAAAGCGCGACGATAATGACTAAGCACGATGAAACTTAATGCTCGAA
TAAACGAGGATGAGATGATTTCGCGATATAGAGGCGGGTGTAAGCAGGCG
AGGACCGCTNCGTATGAAATAGTCGCGTAGGAGGACGCAGGGTGAATAGC
GCGTTGGATGCGTCGAGTTATGATAGACGTAGAGAAGGCGACGCGAGACG
CGCTGGCGAGAGCGGGGCATACGCCGTAAACGAAAAATAACATAAATATA
AAAACGAACAAAGAATATAGCGAAGTAAACATACTTATCACTTTATATAT
AATACTTAATTCACTCACACATCGTCAATTATTAATATATGTCTCATCAT
CAGATATACGCTACTAAGACAGAACATAAATAATACATTCTAATAAACGT
ACACAAGCAAGACTACGATAGACAAAGAAGAAGAGAATGTATATAGATAG
CAGCATTCATCATAAGCAGCGCACACCGTATTTAATGTGATATGCTATTC
CTATCACGCTTGAGGCTGGCGGTGAGCGGTGTAGTGCAGCTGCCGCGATG
GTATTCATGAAATGTGTATGTCGAATATCAAGAGGCGCGTTCGTCTAGGT
GTATGCATGCGCTCGTATGAAGTATACGTTTAGTATAGTGTAGCTAAGTA
TTATAAGCGTATATGTACGGAGTATCACGAGGCAGATAGAACGAGATAGG
ACGATAAGTGATGAGAGAATAAGACGCAGTAATGCATCGTGGGCCGTTNT
TTGTGGGCGCTTATATGGGACGGGGCGCGCGTATAGCTAGAGAATTGACA
CGATCGAGCTTTACGAATTTGCACCACCGACCGCTATAGATTAAGATATA
TATATATTAAACTTATACAATACACTATATGTATATTCTATATCACTCCG
CAGCTATCGGCAGAAAAGAAGCGCGACAAACATGTAAGAACACAGAAANG
AGTAATATATAGACCTATACATTCATACAGAAGGCGCGATAAAGCAGACG
AGAGAAATCGTGTCGCGACATAAGATGAATAACGGGCGCGTTGTGATTAG
CGTGAG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAACCTGTAATCTTGGGAGAAAAATCAACAGCACAGATGAGAAACT
CAACAAAACTACTGAGAAAATCAACAACATGGATTAAAAAGTCAATAGCA
TGAATGAGAAATTCACCAAGAAAATGGGTATTTTGGAAAAAATAGAAATG
TTGGAAATTATCATCTCAATAATTTAAATAAAAACCAAGGGAAGCCATCA
CAAGTATAGTTGATCAAATAGAAGAAAAATATCAGTGTGGAAGAGAAGTG
AATAAATTACATTAAAGAATCGGTGAAGAACATTATTATGATGTTCAGGA
ACTCCCCATCATGGCTAAGGGATTATGTGTAAGAGTCAAAGTAAAGGAGC
TGAAAAAAGGTCTACAGATATAGACCCTCTACTCAACACAATAATAGCAG
ATAACTTACTATAACTAGAGAAAGGAAAAGACAAACTCCCTCGTAGACAC
TAAGAAACCCCAATCATATACTATAGGATCCCCCTTACGCATTCCAAATC
CTTATTCAATATGGGATGGGGTAATAACTAAATCCCTTTAACGCGGCCTA
TTTTTTCCCCCCTAAATATTAAAGTCCATTTCTTCAGCAAAAATCCATAA
AGTTCTTAAGATACTTATGGGCTGGTTTTCTCTGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_i08.g1 MSMg01no063_i08.g1 CHROMAT_FILE:
MSMg01no063_i08.g1 PHD_FILE: MSMg01no063_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:55 2005
         (292 letters)



>mm_chr11_10675290_10675982
          Length = 693

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctgtaatcttggga-gaaaaatcaacagcacagatgagaaactcaacaaaactactg 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aacctgtaatcttgggaggaaaaatcaacagcacagatgagaaactcaacaaaactactg 434

                                                                       
Query: 60  agaaaatcaacaacatggattaaaaagtcaatagcatgaatgagaaattcaccaagaaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 433 agaaaatcaacaacatggattaaaaagtcaatagcatgaatgagatattcatcaagaaaa 374

                                                                       
Query: 120 tgggtattttggaaaaaatagaaatgttggaaattatcatctcaataatttaaataaaaa 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 373 tgggtattttggaaaaaatagaaattttggaaattatcatctcaataatttaaataaaaa 314

                                                                       
Query: 180 ccaagggaagccatcacaagtatagttgatcaaatagaagaaaaatatcagtgtggaaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccaagggaagccatcacaagtatagttgatcaaatagaagaaaaatatcagtgtggaaga 254

                                                                
Query: 240 gaagtgaataaattacattaaagaatcggtgaagaacattattatgatgttca 292
           |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 gaagtgaaaaaattacattaaagaatcagtgaagaacattattatgatgttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)