BAC Information

Click to search

BAC

Clone NameMSMg01-063K05
Chromosome11 (Build37)
Map Location 46,583,308 - 46,583,897
singlet/doubletsinglet
Overlap geneHavcr1
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678
Downstream geneTimd4, Sgcd, LOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063K05.T7 (MSMg01no063_k05.b1)MSMg01-063K05.TJ (MSMg01no063_k05.g1)
ACCAG289326AG289327
length683673
length of high quality
(start - end)
603 (31 - 633)526 (55 - 580)
definitionCHROMAT_FILE: MSMg01no063_k05.b1 PHD_FILE: MSMg01no063_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:04 2005CHROMAT_FILE: MSMg01no063_k05.g1 PHD_FILE: MSMg01no063_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:04 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCGGCGCTATACGACTCCTATTCGGAGAGATCCGCGGAATTCAATTTTGT
CCGATTCAACCTCACCCTACTGAGTCACTCACTCTGATGCCTGGAAGGGC
TTACTTAACCGCCTAAGTGCCAAACAGAGCCTAGACTGTAGATGTTGCCT
AAACCTAGCCATTGCCTTTGGATGCTTGGAAGGGCTCTGCCAATGAGTAA
AATATAAATACTGGAATGTAGGAAGGGTGGAGGGCTAGGAGTCATCCAAA
GGGCAGTGCCAGCTTTGGCGGTTGTTAGGGACTCCCACAGACCTGCAGTA
TTTCCACTCATTGTATGGGTGTTGAGAGGGGCAGGGTTGCCAACAGAGTT
GTCTGTCATTTGCAAAAACTAGAATTATATAATCATCTGATATTGGCTTC
ATCTGTAAATGCAGTTAAAGGATTACTTGTTAGAATGTTATAACCCTTAT
ATGTGCTAGATACTCAGTGGAAAGAGGATGCTGTATTTCCTTCATAGACA
CACAGAAACAATGAAACCATTGTATTTCTTTTTACAAAATAGACTTCAAA
AGTAGTTTGAATATCTGAGTGTTCAAAATTTGATGCTCAGTGACTTTCTT
GACATATTAAGTCCTAATCCTCACAATGTGTAAAACACACTGGCCTTGTG
GATATTATCTACAGATATTAGAAAAAGAAAAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCCTATTATCCCTTCCTATGATGGGCCCTATCACAAGCTGGGGAGTC
TGGAAATGCTGACAAGGCAGATCTTACATAGAACACTTTAATGAGAGACT
CTCCCATCCCAATTCTTCTGGTTAGAGATTAGTCACAGATTCTTAACACA
ATGAAGGGGTGAGATGATCATACAAGGCTGGGGAGGGGTGAGCACACAGA
ATTGCAGCCTCTATCCGGCAGCCAGTCTGGATGCTGAATACTGCCAACAA
CTAAGTGAAATGGATCTTGAGGTATCTTCAGCTTAGATACCACCCTGACT
GCAGCCTGCCAAAGACCCTAAAGCAGAAGGTCAGCTCAACCATACCTACA
TCTCCTAAGCCACAGAAGTCTGAGACATTCAGTGTTAGAGGCACCACATT
TTGAGTAATGTGCTATGCCACAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAAACCATGAGTATAA
TTTACTAGATCTAAGGAGGAAAAGCAGAATATTACTAATACAGTCAGAAA
ACGTTGAATCAGCATTAGATAACTTAAGTACTGATATGAAATCTATTACA
TGCAAAGTATTATCAGGGACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_k05.b1 MSMg01no063_k05.b1 CHROMAT_FILE:
MSMg01no063_k05.b1 PHD_FILE: MSMg01no063_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:04 2005
         (603 letters)



>mm_chr11_46583102_46584105
          Length = 1004

 Score = 1071 bits (554), Expect = 0.0
 Identities = 584/598 (97%), Gaps = 9/598 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattc-aattttgtccgattcaacctcaccctactgagtcactcactctgatgcctgga 65
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaattttgtccgattcaacctcaccctactgagtcactcactctgatgcctgga 266

                                                                       
Query: 66  agggcttacttaaccgcctaagtgccaaacagagcctagactgtagatgttgcctaaacc 125
           |||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agggcttacttaagggcctacgtgccaaacagagcctagactgtagatgttgcctaaacc 326

                                                                       
Query: 126 tagccattgcctttggatgcttggaagggctctgccaatgagtaaaatataaatactgga 185
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tagccattgcctttggctgcttggaagggctctgccaatgagtaaaatataaatactgga 386

                                                                       
Query: 186 atgtaggaagggtggagggctaggagtcatccaaagggcagtgccagctttggcggttgt 245
                  || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 -------aa-ggtggagggctaggagtcatccaaagggcagtgccagctttggcggttgt 438

                                                                       
Query: 246 tagggactcccacagacctgcagtatttccactcattgtatgggtgttgagaggggcagg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 439 tagggactcccacagacctgcagtatttccactcattgtatgggtgttgggaggggcagg 498

                                                                       
Query: 306 gttgccaacagagttgtctgtcatttgcaaaaactagaattatataatcatctgatattg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gttgccaacagagttgtctgtcatttgcaaaaactagaattatataatcatctgatattg 558

                                                                       
Query: 366 gcttcatctgtaaatgcagttaaaggattacttgttagaatgttataacccttatatgtg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcttcatctgtaaatgcagttaaaggattacttgttagaatgttataacccttatatgtg 618

                                                                       
Query: 426 ctagatactcagtggaaagaggatgctgtatttccttcatagacacacagaaacaatgaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctagatactcagtggaaagaggatgctgtatttccttcatagacacacagaaacaatgaa 678

                                                                       
Query: 486 accattgtatttctttttacaaaatagacttcaaaagtagtttgaatatctgagtgttca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 accattgtatttctttttacaaaatagacttcaaaagtagtttgaatatctgagtgttca 738

                                                                     
Query: 546 aaatttgatgctcagtgactttcttgacatattaagtcctaatcctcacaatgtgtaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaatttgatgctcagtgactttcttgacatattaagtcctaatcctcacaatgtgtaa 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space:   589442
Effective search space used:   589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)