Query= MSMg01no064_g19.b1 MSMg01no064_g19.b1 CHROMAT_FILE:
MSMg01no064_g19.b1 PHD_FILE: MSMg01no064_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:21 2005
(528 letters)
>mm_chr11_18873408_18874331
Length = 924
Score = 932 bits (482), Expect = 0.0
Identities = 515/532 (96%), Gaps = 12/532 (2%)
Strand = Plus / Minus
Query: 1 cactccagactctctgctgcccctctatactgcagtctcatggagaagtctctggctttg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cactccag-ctctctgctgcccctctatactgcagtctcatggagaagtctctggctttg 666
Query: 61 gtgattgggtccagggcctgggcagaaagagacttgtcaagttctcatgggagttcagtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 665 gtgattgggtccagggcctgggcagaaagagacttgtcaagttctcatgggagttcggtg 606
Query: 121 actcatttcatcagctcagaagattatgtgaccccacccccaacccccgccccctgtttg 180
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 605 actcatttcatcagctcagaagattaggtgacccc-------acccccgccccctgtttg 553
Query: 181 acaactggctgatgagtgtttcctgcaaatcctggagtcaatgctttgcctcctgggtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acaactggctgatgagtgtttcctgcaaatcctggagtcaatgctttgcctcctgggtat 493
Query: 241 cccagagctgcacagcctcatccacttcctgcctacaaccaac----gttgacttttatg 296
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 492 cccagggctgcacagcctcatccacttcctgcctacaaccaacgttggttgacttttatg 433
Query: 297 ctgaatcttcacattacctccccaagtctagtagaatccaggatcaagatggtatagggc 356
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 432 ctgaatcttcacattacctccccaagtctagtagaatctaggatcgagatggtatagggc 373
Query: 357 tttgcctgctgattaaactgattacatttttgtgccaaaatgttaaagagagaaaggatc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttgcctgctgattaaactgattacatttttgtgccaaaatgttaaagagagaaaggatc 313
Query: 417 atactttttaaaatattgaagtaattagtatttgactcaaactttctccctgggacttag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atactttttaaaatattgaagtaattagtatttgactcaaactttctccctgggacttag 253
Query: 477 tatgtctatatggaaagttctgtttaagcatagtgtattttgtatatttaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatgtctatatggaaagttctgtttaagcatagtgtattttgtatatttaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 924
Length adjustment: 10
Effective length of query: 518
Effective length of database: 914
Effective search space: 473452
Effective search space used: 473452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_g19.g1 MSMg01no064_g19.g1 CHROMAT_FILE:
MSMg01no064_g19.g1 PHD_FILE: MSMg01no064_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:21 2005
(243 letters)
>mm_chr11_18730401_18731043
Length = 643
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%)
Strand = Plus / Plus
Query: 1 aataatgggctccagagggattgtatttaatgaaattgaaatcccaaacatctcaaaata 60
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatggcctccagtgggattgtatttaatgaaattgaaatcccaaacatctcaaaata 260
Query: 61 atgattgcaagcatgtgcaaaataatcaaaggagaaattaattcattaacaaatctcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgattgcaagcatgtgcaaaataatcaaaggagaaattaattcattaacaaatctcaaa 320
Query: 121 aggacacatataaacagctggatgaaatacgaaaattgatatgaattataaaaaaacttt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aggacacatataaacagctggatgaaatacggaaattgatatgaattataaaaaaacttt 380
Query: 181 tcaataaaaataaatactgatggaaatctctgacatgctgtaaatgataagcacagtaag 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcaataaaaataaatactgatggaaatctctgacatgctgtaaatgagaagcacagtaag 440
Query: 241 tca 243
|||
Sbjct: 441 tca 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
