BAC Information

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BAC

Clone NameMSMg01-064G24
Chromosome11 (Build37)
Map Location 78,150,163 - 78,150,529
singlet/doubletsinglet
Overlap genePigs
Upstream geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc
Downstream geneUnc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064G24.T7 (MSMg01no064_g24.b1)MSMg01-064G24.TJ (MSMg01no064_g24.g1)
ACCAG289909AG289910
length1,1151,246
length of high quality
(start - end)
366 (28 - 393)---
definitionCHROMAT_FILE: MSMg01no064_g24.b1 PHD_FILE: MSMg01no064_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:22 2005CHROMAT_FILE: MSMg01no064_g24.g1 PHD_FILE: MSMg01no064_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCCC
GACTCCTCTTTTCTGTAGGCTATGAAATCACTTTCAGTTTACTCAACCCA
GACCCCAAGTCCCACGATGCCCCCTGGGACATTGAGGGAGCTGTCCAGCG
CTTTGTGCAGCCTTTCCTGAATCGCCTCAGTGCTGCGGGCAATTTCTCTG
TGGACTCTCAGGTAAGACCAGGAATGAGTTATGGAGCCTTTTCTTTTTCT
TTCTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGACAGGGTTTCTC
TGTGTAGCCTAAATGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCTCA
AACTCAGAAATCCTCCTGCCTCTGCCTCCTGAGTGCTGGGATTTTTTTTG
TGCACCACCAATGCCCAGCACGGAGCCTTTTTAAAGGCTATATTTTTTTT
TTTCCCCCCCCCGGNAANGGCTCTCCCTCCCAAAAAAAAAGAGGATTTGC
TTGTGTAGCTGTGTGTAGGGCAGTGTCGTGTGAGCAGGTACGGGGATGTA
GCTTGTAGGAAGCACTGTGTGCACCTGTTTATGTCCGTCAGTCCACTGCT
CCCTTGAGGGCATGTTCCGGTGTCCTTTCCTTGGTGTCCAGCTCAGGGAG
TGTCACCAGAGTGGCTTGGCAGAGCTACTTCCCAAGTACTAACTCAGCAG
TTGTACCTACATGTTAAAGCCATCAGCCCCCCCTAAGGAAGTTATTTTTA
AACAGCTTCCTGAAATATTTTTTTTCTGTCACGATACACCCTTATACCGC
CCTGCTTGCTTTCAGTGACACATCCTGTCCCCGAATGTAAAGCTTGTTGT
TCTTTATTCCACCCTGCACGCGCCACGCCACCAATGCCCCGTATAACTCT
ACTCTATTGTCTTTGTGAACCCCCCTCTTTCTTTTTCCCCCCCTTATCCT
TCCTGAACTTCTCTTAATCTCTCCTTCTTCCCCTAACTCTTTTTCTCTCC
TTTTCTTCTCCTCCTGTCCTCCCTTCTACCACTTCACTCCTCTCCCTTTT
TCCCTCTTCCCTTTTTCTTTTTCTCTTTTATCTCCCCATATCCTATCACC
TCTCTTTCTTTATTT
NNNTTATGCATTGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGTCTACAGAGTGAAATC
CAGGACAGTTAGGGTTACATAGAGAAACCTTGTCTCGGGGAATGGGGTTG
GGGTTGTNNCTTTNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTCC
TTTTTTTTTTTCTTCCCTAATTTCTTTTTTTTTTCCTTTTTCTTCTTTTT
TTCTTTTTCTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTNN
TTTCNTTTTTTTTCTTTTTTTTTTTTTTTCCTTTTTTTTCTCTCTTTTTT
TTTTTTTTTCTCTTTTCTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTCCT
CCCTCTCTTTTTTTTTTTTTNNNNNNNNNNNNTTTTTTTTTTTTTTTTCC
CCCCCCCNNNNNNNNNNNCCNCTTATAAAAAAAAAAAAAGGGGNNNNNNN
NNNNNNNNNNNCNNCNNCNNNNCNCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCNCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCNCCNCCCCCCCNCCCCCCCCCCCCCCCC
CCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCNCCCCCCCNCCCCCCCCCCCCCNCCCCCCCCCC
CCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCNCG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCC
CCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCGCCCNC
CCCCCCCCCCCGCCCCCCGCCGCCCCCCCGCCCCCCGCCCCGGCCGCCCC
GCGCCCCGCCCCCCCGCGCCCCCCGCCCGCCCGCGCCCGCCCGCCCCCCC
GCCCCCCCCCCGCCCCCGCCCGCGCCCCCCCGCCCCCGCGCCCCCCGCCG
CCCCCCGGCGGCCGCCCCGCCCCCCGCGCGTCTGTTTCTTTTTTCTTCTT
TCTTCTTTTCTTCTTTTTTTTCTCTCTCTTTCTTTTTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_g24.b1 MSMg01no064_g24.b1 CHROMAT_FILE:
MSMg01no064_g24.b1 PHD_FILE: MSMg01no064_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:22 2005
         (366 letters)



>mm_chr11_78149948_78150714
          Length = 767

 Score =  561 bits (290), Expect = e-164
 Identities = 341/368 (92%), Gaps = 18/368 (4%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcc-cgactcctcttttctgtaggctatgaaatcactttcagtttactcaacccag 74
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattccacgactcctcttttctgtaggctatgaaatcactttcagtttactcaacccag 275

                                                                       
Query: 75  accccaagtcccacgatgccccctgggacattgagggagctgtccagcgctttgtgcagc 134
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 accccaagtcccacgatgtccactgggacattgagggagctgtccagcgctttgtgcagc 335

                                                                       
Query: 135 ctttcctgaatcgcctcagtgctgcgggcaatttctctgtggactctcaggtaagaccag 194
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctttcctgaatcgcctcagtgttgcgggcaatttctctgtggactctcaggtaagaccag 395

                                                                       
Query: 195 gaatgagttatggagccttttctttttctttctttttttttttttttttttttttt---- 250
           |||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||    
Sbjct: 396 gaatgagttatggagccttttctttttctttc-tttctttctttcttttttttttttttt 454

                                                                       
Query: 251 ------------gggttttcgagacagggtttctctgtgtagcctaaatgtcctggaact 298
                       || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 455 ttttttttttttggtttttcgagacagggtttctctgtgtagcctagatgtcctggaact 514

                                                                       
Query: 299 cactttgtagaccaggttggcctcaaactcagaaatcctcctgcctctgcctcctgagtg 358
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 515 cactttgtagaccaggttggcctcaaactcagaaatccgcctgcctctgcctcctgagtg 574

                   
Query: 359 ctgggatt 366
           ||||||||
Sbjct: 575 ctgggatt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space:   270606
Effective search space used:   270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)