BAC Information

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BAC

Clone NameMSMg01-066B21
Chromosome11 (Build37)
Map Location 43,238,496 - 43,238,934
singlet/doubletsinglet
Overlap genePttg1
Upstream geneGabrb2, Atp10b, EG544767
Downstream geneSlu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066B21.T7 (MSMg01no066_b21.b1)MSMg01-066B21.TJ (MSMg01no066_b21.g1)
ACCAG291167AG291168
length716696
length of high quality
(start - end)
91 (78 - 168)442 (77 - 518)
definitionCHROMAT_FILE: MSMg01no066_b21.b1 PHD_FILE: MSMg01no066_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:48 2005CHROMAT_FILE: MSMg01no066_b21.g1 PHD_FILE: MSMg01no066_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAATCAAAATTGGGGCGCTAAACGACTACTATAGGTCGTAGGGGGCGGA
ATTCAAGTCAGTTTGGAAAGAGTGAGAACTGACCCCAAAATCACACATAC
ACACATTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTC
TCCCTCTCCCTCTCCCTCTCTGTGTCTAAATCTATGTATCTCTAACAATC
ACGCTCGCTTATGTTTAAAGACAATATATGTAACTATATAGGTAGAGAGA
ATGTGAATCTAGGCTGGGGGAGTGTTGAGTGGACAGTTGGATGGAAACGG
GTTGGGGGAGGGGTGGGAGGGGGTTTTTTTTTGTGGGGGATGTGGAAGGT
GAATGGGGAGAGAGAGGGAGGTAGGGGAGGGAAGACAGGGAAAGGCAAAA
ATGGAAGAATGAAAAGAGAGAAAAACCAAAAAAAAAGGAGATAAAAAGAT
ATGTAAGAATGTATGGCTAAGGATAGGATTGAATAGAATGCAGAAAGGAG
AGGATAGAGGTGTGGCGAAATATGTATAAAGGTAGGGGTGGGGTAGAGGT
AGGGTGTGAGGTAGGGAGTGGGGGGGGGGGAGGGGTAGGGGAGAGAGGAG
GGGAGGGGTAGTGAGGGGAGAGGGGTGGTGGAGGGGGAGGGGGAGAGGAT
AGAGAGGTGAGAGAGGGGTAAGGAGAAAGAATGGGGAGAAAGGGTGGAAG
GGGGAGAGGAAGGGGG
NCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCAAATTCAGTCCCCAGAACCCACACAGTATAA
GGAGAACCAATTTCCACAGGTTGTCCTCTGACCTCCTCCACAGGCACACC
ACGGCACGCGTGTGACCCCACACATACACAAATAAAGGTAATAAATGTAT
TGCTCTTAAAGATTAGGCCATACAACTTAACTCAATTCTTACACACAAAC
TTGTGCCTCATTTGGGGCAGTGACTTAGCACTCTAAATAACCTCATTAAG
ACAATAAGTATGAACATAGGCACCATGGTGCACGCCTTTAATCCCAGAAT
TTAGGAGGCAGGGGTAAGTGGATCTCCTGAGTTCAAGACCAGCCTGATCT
GCATAGCAAATCCCAGGCCAGTTAAAGCTATGTCTCAAAAAACCGATTTA
AGCAGAGCGCCTGGACACGTGACTTAGTAGCATTTGAAAAGCTCCAAGTT
CCATTCCTGGCAGTGCATAAGCCAGGCACGGTGGACCATGCCTGTAATCA
CTGCACTGGGCAGGTGGAGTCAAAGGATCAGAAGTTCAAGGCCCCCCTAG
GATACATTGGGAACTATAGGCTGGGACCATTCACAACACCTGAGTATCTC
ATGGTAGGCAATACTTACCACCAGACCCCAGCTTTCACCCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_b21.g1 MSMg01no066_b21.g1 CHROMAT_FILE:
MSMg01no066_b21.g1 PHD_FILE: MSMg01no066_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:48 2005
         (442 letters)



>mm_chr11_43238293_43239134
          Length = 842

 Score =  777 bits (402), Expect = 0.0
 Identities = 431/442 (97%), Gaps = 3/442 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccccagaacccacacagtataaggagaaccaatttccacaggttgtcctctgacctcc 60
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||
Sbjct: 204 gtccccagaacccacacagtataaggaaaaccaatttccacaggttgtcctctga---cc 260

                                                                       
Query: 61  tccacaggcacaccacggcacgcgtgtgaccccacacatacacaaataaaggtaataaat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacaggcacaccacggcatgcgtgtgaccccacacatacacaaataaaggtaataaat 320

                                                                       
Query: 121 gtattgctcttaaagattaggccatacaacttaactcaattcttacacacaaacttgtgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gtattgctcttaaagattaggccatacaacttaactcaattcttacacacaaacctgtgc 380

                                                                       
Query: 181 ctcatttggggcagtgacttagcactctaaataacctcattaagacaataagtatgaaca 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatttggggcagttacttagcactctaaataacctcattaagacaataagtatgaaca 440

                                                                       
Query: 241 taggcaccatggtgcacgcctttaatcccagaatttaggaggcaggggtaagtggatctc 300
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 taggcaccatggcgcacgcctttaatcccagaatttaggagtcaggggtaagtggatctc 500

                                                                       
Query: 301 ctgagttcaagaccagcctgatctgcatagcaaatcccaggccagttaaagctatgtctc 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagttcaaggccagcctgatctgcatagcaaatcccaggccagttaaagctatgtctc 560

                                                                       
Query: 361 aaaaaaccgatttaagcagagcgcctggacacgtgacttagtagcatttgaaaagctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaccgatttaagcagagcgcctggacacgtgacttagtagcatttgaaaagctcca 620

                                 
Query: 421 agttccattcctggcagtgcat 442
           ||||||||||| ||||||||||
Sbjct: 621 agttccattcccggcagtgcat 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)