Query= MSMg01no066_d03.b1 MSMg01no066_d03.b1 CHROMAT_FILE:
MSMg01no066_d03.b1 PHD_FILE: MSMg01no066_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:54 2005
(643 letters)
>mm_chr11_92865786_92866828
Length = 1043
Score = 1038 bits (537), Expect = 0.0
Identities = 543/545 (99%)
Strand = Plus / Minus
Query: 5 gaattctccaagcagtgacgctcatattggttactgaaatatgcttgggagtccatcagg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaattctccaagcagtgatgctcatattggttactgaaatatgcttgggagtccatcagg 486
Query: 65 ttcagaaaagggaatcggagtctctgtgaaatgcatatgccaagaatgagcatatccaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttcagaaaagggaatcggagtctctgtgaaatgcatatgccaagaatgagcatatccaag 426
Query: 125 ataatgcttaactgaactacaagcagaagtattttgaacacaggctattttttatgtgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ataatgcttaactgaactacaagcagaagtattttgaacacaggctattttttatgtgta 366
Query: 185 tttatgcagagaaaactcatgaacagtgactaactcagcatggtaggtcagttagcagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttatgcagagaaaactcatgaacagtgactaactcagcatggtaggtcagttagcagtt 306
Query: 245 ttattaatcaagatatttctaaaaaggaaaatgtgttagctgaatgaagcaaatacatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttattaatcaagatatttctaaaaaggaaaatgtgttagctgaatgaagcaaatacatac 246
Query: 305 tatctttgtcatttaagggctccagtttccaggtaagggaccagtggttctcaaccagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tatctttgtcatttaagggctccagtttccaggtaagggaccagtggttctcaaccagtg 186
Query: 365 gtttgcagtcctttggggtctcctaagatcactggaaagcacggacatttacattacaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtttgcagtcctttggggtctcctaagatcactggaaagcacggacatttacattacaat 126
Query: 425 tcataatcatagcataattacctttaggaagcagcaatgagaataattttatggttgggg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcataatcatagcataattacctttaggaagcagcaatgagaataattttatggttgggg 66
Query: 485 tcaccagttatctctttcactttcatgaggaatcagatgtattattggaaagagaaggta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 65 tcaccagttatctctttcactttcatgaggaatcagatgtattattggaaagagaagata 6
Query: 545 ctgac 549
|||||
Sbjct: 5 ctgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_d03.g1 MSMg01no066_d03.g1 CHROMAT_FILE:
MSMg01no066_d03.g1 PHD_FILE: MSMg01no066_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:54 2005
(616 letters)
>mm_chr11_92759038_92760053
Length = 1016
Score = 980 bits (507), Expect = 0.0
Identities = 568/617 (92%), Gaps = 45/617 (7%)
Strand = Plus / Plus
Query: 1 aaaaaataaagaatctaagacacaaacacctcaattaaaatgggctatggatctgaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaataaagaatctaagacacaaacacctcaattaaaatgggctatggatctgaatag 260
Query: 61 agaattcttagaagaagaaatacaaaatggctgagaaatattctcagaaagtgttcagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattcttagaagaagaaatacaaaatggctgagaaatattctcagaaagtgttcagct 320
Query: 121 tctgattgacatctatggtagccctgctcttttttggagagacatgaaagaagagtggat 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tctgattgacatctatggtagccctgctcttttttggagagacatgaaggaagagtggat 380
Query: 181 gggaggcagggagttggtacttggatgagaggagaaattgcagtcgggatgcaaaagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaggcagggagttggtacttggatgagaggagaaattgcagtcgggatgcaaaagtaa 440
Query: 241 ataaataaataaataaataaataaataaataaataaataaataaataaataaataaataa 300
|||| ||||||||||||||||||
Sbjct: 441 ataagtaaataaataaataaata------------------------------------- 463
Query: 301 ataaatagttttaaaaggtgttcagcttctttagcaaatagggaaatgagaatgaagagc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 -------gttttaaaaggtgttcagcttctttagcaaatagggaaatgagaatgaagagc 516
Query: 361 cacactcttaattcccatgcatatatggtaatttatgtgaacctgtctccatgaaggata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cacactcttaattcccatgcatatatggtaatttatgtgaacctgtctccatgaaggata 576
Query: 421 gtgttaaataccagagatgtcttcactgaataaagcccagcagcaagggcccagaatctg 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtgttaaataccagagatatcttcactgaataaagcccagcagcaagggcccagaatctg 636
Query: 481 ctccatgactacttcagtggcttagccaggtttatgatcttgatgaaaaaaaaaaa-gag 539
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 637 ctccatgactacctcagtggcttagccaggtttatgatcttgatgaaaaaaaaaaaagag 696
Query: 540 tgattttatccaatggccacaagtttactataaataaaaccaaaacaaattccctcaggc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgattttatccaatggccacaagtttactataaataaaaccaaaacaaattccctcaggc 756
Query: 600 tgactgggcttgcttcc 616
|||||||||||||||||
Sbjct: 757 tgactgggcttgcttcc 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
