BAC Information

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BAC

Clone NameMSMg01-067I23
Chromosome11 (Build37)
Map Location 8,001,605 - 8,001,861
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067I23.T7 (MSMg01no067_i23.b1)MSMg01-067I23.TJ (MSMg01no067_i23.g1)
ACCAG292266AG292267
length689701
length of high quality
(start - end)
234 (128 - 361)253 (75 - 327)
definitionCHROMAT_FILE: MSMg01no067_i23.b1 PHD_FILE: MSMg01no067_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:41 2005CHROMAT_FILE: MSMg01no067_i23.g1 PHD_FILE: MSMg01no067_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGATTTCTCATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCTTTTATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCTGNTTCTCCGGACTTCCGCGAAGTTCTTTGATCC
ACTTAGATTTGACCTTAGTACNCGGAGATAAGTATAAATCAATTCGCATT
CTTGCTACCGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCCCTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGTGTCTTCAATTCCATTCCATTGGTCT
ACTTGCCTGTCTCTATACCATTACCATTGCAGTTTTTATCACAATTGCCC
TGTAGTAAAGCTTTTTTTCTGGCATGATGTTTCCGCCAT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAAGGAATCAGACTAAAACCTAAAA
CTCGAAATTCAGACATGGGAAAAGGACCTGCTTGGTAATTTTCCTTCACC
AAACAATCATGGTAGCTTTTTTCCCCTCAGCTATTTCATTAGTGGAGTCT
GTCAAAATAAAAAAAAAAATATTTCAAGTAAGAAGGATGATGTCTTTATC
TGCACAGCCCACAGCTTTCCATACTTTATTTCATGTGCTCATCACAACGT
GGGGCATTAATCCTCCGTCAAAAGGAGTTAACACAGTCAAGGAGAAGGGA
GATGACAAGCAAAGAGAATTGTCTACTGCCCAACTCTGCAGTGAAGCCAG
GCTTTGCTCCCATTGCCCCTCAACTGCAAAACCATATTTCTACTTAATAA
ATGAAGCAAAACCAACAAACAAATAAATCCTCTTTTCTACCTCTGGATTC
AGATGACAAGAATATTTTACCCATGATTGTTGAGCACTCGTAAATGACTT
TTTTCTCCTTCCACCCTGTAAACACATCACTATTTATTATAACTAATATG
GTATATTGCTCCTCTTCAAATAACTTTATCACTTTCTGGCGGCCCATAAC
CTCTTAAACGCTTTACTCTCTTGTAGACATACATTGCTTCTCTAAACACT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_i23.g1 MSMg01no067_i23.g1 CHROMAT_FILE:
MSMg01no067_i23.g1 PHD_FILE: MSMg01no067_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:42 2005
         (253 letters)



>mm_chr11_8001544_8002196
          Length = 653

 Score =  397 bits (205), Expect = e-115
 Identities = 243/259 (93%), Gaps = 8/259 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaggaatcagactaaaacctaaaactcgaaattcagacatgggaaaaggacctgcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 318 ccaaggaatcagactaaaacctaaaactcgaaattcagacatgggaaaaggaagtgcttg 259

                                                                       
Query: 61  gtaattttccttcaccaaacaatcatggtagcttttttcccctcagctatttcattagtg 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 258 gtaattttccttcaccaaacaatcatggtagcttttttaccctcagctatttcattagag 199

                                                                       
Query: 121 gagtctgtcaaaat---aaaaaaaaaaat---atttcaagtaagaaggatgatgtcttta 174
            ||||  |||||||   |||||||||  |   ||||||||||||||||||||||||||||
Sbjct: 198 aagtccatcaaaattttaaaaaaaaa--ttgtatttcaagtaagaaggatgatgtcttta 141

                                                                       
Query: 175 tctgcacagcccacagctttccatactttatttcatgtgctcatcacaacgtggggcatt 234
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tcagcacagcccacagctttccatactttatttcatgtgctcatcacaacgtggggcatt 81

                              
Query: 235 aatcctccgtcaaaaggag 253
           |||||||||||||||||||
Sbjct: 80  aatcctccgtcaaaaggag 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)