BAC Information

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BAC

Clone NameMSMg01-067K21
Chromosome11 (Build37)
Map Location 86,787,268 - 86,787,560
singlet/doubletsinglet
Overlap geneYpel2
Upstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067K21.T7 (MSMg01no067_k21.b1)MSMg01-067K21.TJ (MSMg01no067_k21.g1)
ACCAG292357AG292358
length706698
length of high quality
(start - end)
260 (43 - 302)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no067_k21.b1 PHD_FILE: MSMg01no067_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:51 2005CHROMAT_FILE: MSMg01no067_k21.g1 PHD_FILE: MSMg01no067_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGGTAGGCCAGGCTGGCCTTGAACTCACAGAGGTTCCCTTGCCTCT
GCCTCTTGAGTGCTGAAGTTAACCGTGTGTGCCTCCGTTTTTGGCTATGA
TCCGGATGCAAGTATGTAGTTGTGTTGTGGAAATGATTTGGGGGGCCTTT
TTTGGGGGAGTTGTTTTTTTGAGACAGGCTTTCTCTGTGTAGCCCTGGCT
GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGTGCTGGG
ATTAAAGGCATGCACCACCACACCTGTCTCTTTGGGACCTTATTTTGACT
GTTCAAGATGTTTTTTTTTCTTCCCCTCCCTCCCGCTGTCCATAGGCTGT
CAACTCTGCAAGAGTGTGGCGAAGGTTATAACAACAAACTCTATGGGGGA
TCGATATGGTGTTAGGCGCCACCATGTCAACTTCACCTCTGCTGGATCAG
ATGGTCACGGCTGAACTTGCAGTTGTTTATCACTGAAATTATGTGTTAGT
CTTCTGCCTAATGCCCGATCTCTTCCGATCATCTTACGTGATACCTTCAC
CTCCACGCTTTTGCAATTTTATTTTTTTTTTTACATCACTTATGTTTTCC
TTGTTCATATTTCTTTTATTCTCTATTTTTTTTCTTCTATCTCCTTTTCC
TTCTTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTTTGTGGATTCAGGGCATAACCAG
GAACCTCTGCTTTTTTTAGGCTTCCTACAGAGGAGCGGTGAGAAAAGAAA
TAATTCTACTCCAGGGAAATGCATAATTGAGAGGCTGCCTGCGTGCTTAA
GAAAACACACCGCGTGGCCTCTCTAAAGCAGAAAGGCCGCCCGAGCCATT
GCTTTCCTTTCTCGAGCTGCTGTTTGTGTAAGACCTGGGTTCGGTGCTGC
TCATCCTGGCCACTGGGCAGCCCCGGCTGTGGACTTAGCATCTGGCTTAG
ACAGCTGGTAATGGTGTTGCACACTTCTAATCCCAGCTCTAGGGAACAGA
GGCAAGAAGTTCCAGGCCGGCTTGGGCTATGAAGAGAGCAAACAAACAAA
ACCCAGACCAAACAAAAAGAACTCCCACCCTCTAATAAAACAGCGGCATT
TGGTGTGAACTTCGGCTGAATGCTGCTTCCATGTCTCTATGTCCCCTTCT
GGAATTTTTGTCCTTGCTAGCAGCAGAATTGGGGTGTTGGAAATATTGAG
CACGTGTCAGGAAACCCAGTGGAAGGGCAGGGAATGGTAACTTAGCCCTT
TCACCTTTGAGCCTTTGCTCACCGCAGGCCAGCTTGGGATCCAGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_k21.g1 MSMg01no067_k21.g1 CHROMAT_FILE:
MSMg01no067_k21.g1 PHD_FILE: MSMg01no067_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:51 2005
         (292 letters)



>mm_chr11_86787068_86787760
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttgtggattcagggcataaccaggaacctctgc-tttttttaggcttcctacaga 59
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 493 agtgtttgtgaattcagggcataaccaggaacctctgcttttttttaggcttcctacaga 434

                                                                       
Query: 60  ggagcggtgagaaaagaaataattctactccagggaaatgcataattgagaggctgcctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggagcggtgagaaaagaaataattctactccagggaaatgcataattgagaggctgcctg 374

                                                                       
Query: 120 cgtgcttaagaaaacacaccgcgtggcctctctaaagcagaaaggccgcccgagccattg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cgtgcttaagaaaacacaccgcgtggcctctctaaagcagaaaggccgcccgagccattg 314

                                                                       
Query: 180 ctttcctttctcgagctgctgtttgtgtaagacctgggttcggtgctgctcatcctggcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctttcctttctcgagctgctgtttgtgtaagacctgggttcggtgctgctcatcctggcc 254

                                                                
Query: 240 actgggcagccccggctgtggacttagcatctggcttagacagctggtaatgg 292
           || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 accgggcagccccggctgtggacttagcatctggcttagacagctggtaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)