BAC Information

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BAC

Clone NameMSMg01-068I12
Chromosome11 (Build37)
Map Location 118,640,034 - 118,640,225
singlet/doubletsinglet
Overlap geneD11Bwg0517e
Upstream geneTmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I12.T7 (MSMg01no068_i12.b1)MSMg01-068I12.TJ (MSMg01no068_i12.g1)
ACCAG293004AG293005
length801817
length of high quality
(start - end)
245 (149 - 393)192 (141 - 332)
definitionCHROMAT_FILE: MSMg01no068_i12.b1 PHD_FILE: MSMg01no068_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:59 2005CHROMAT_FILE: MSMg01no068_i12.g1 PHD_FILE: MSMg01no068_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCCCCTCTTTTTNNCCCCCCCTTTTTTTTTTTTTTTCATTTTCC
TTTTTGATAGTCTGCCTCATCTAATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCACAGAAGACGCGGAATTCCAAACTGGTTTCCCATGAGAAGGA
GAGCTGACCATGGGTTGCCTAGCCCTAGCCCATACATCTACAGTACAACC
CTTACATCTAAGGCTCAGGGGGCAGAAAGGCTGTTAGAGCCAGAGGACCA
GGATGCCGGGTGCTAGATCTACCTGCGTGAAATTGCAACAATGTAGCTAC
CTAGACAAGACCTGAATGACTATACCACTGGCTAACAAGCCAGGCAACAT
GGATGGTGGCCTCACAACAGCCCCGCCCCTAGAAGAAGAACTATATTTGA
GTTTAATTCCTGGGATCTACATACTTCAGGGTAGATGTGACTCAGCACGT
AGTCAGTCCTCTGATCTCGTCTCGCATGTGTGCCCTAGCCTGCACATGCC
CTCTATTAATCAAATACTAACGATGATAATAATAATAATAATAACTTGCA
GCAAGTCTTACAAGGTATGAAGTATGGGTGGTCATAGAACACTCCAACTA
ACACGACGTTTTACGAACCCGAGGTGAATGCAAGCCCGTTTATCTTCTCC
TGTTCAGCTCTTTCGCTTTCTGCATTCTGAAGTTATATTATTCCTCGACT
CATATAAGTGACATAAGACTTTCATTTCGAGGACTTACACCTTCTCTTTT
TGTCTCATACATCTCGTTTTATATTTTGCACTTGTAGCACATTCTTATTA
T
TTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTCCNCCC
CTTACTTTTTTTNTCTAGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAAATCAGGTTGTCAG
GCTTGTGTGGCAACTACCTTTACCCACTGCGCCATCTTACTGGGCACCTC
TAGCCTCTGACTATAATGCTAAATGTTAATTTGGAACCTACTCTAATCCA
GGACAATTTTATCTTCTGAGCTCTTTGCCTGAGAAACACCTGTGGAGATG
GCTCAGTGCTTGCTGTACAAGCCTGAGGGCTGTAGCGTGGGTCCGCATGG
CCCACAGAAGTCCTGGGTGTAGATGGGACCACCCTTTTGTAATTCCAGCC
TGTGGAGGTGGGGACAGATCTCCAGAATATATTGTCTAATAAGAAAACTC
TTCGGCATGGATCAGCTCTGAGTCTGATGTTATGACCCTGTGTCAGATAA
TATGGAGATTGAGCATTAGAATATGATTCCCAATAATAGCCTTGGGGATC
GACTTGTATATGTGCCCACGTGCGCCTCCTTACTTGAGCTCTTTCATATA
CACAATCACTTTTTTCTCTTGCTACATAAATACCACGATATATTACTGTG
TTTTTATCCTTTGACATATAGAAACAATAATTTTATTTTCCGGCTAAAGT
ATGGATTTTTCCCCCATATATTTACTTATAAATAACTGTCTTTTTGTGAA
CTCTGAGCCTATATTTATTTAAGCAACTTCCATTCTTATACCATTATAAT
TGTGTTTCAAGTGGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i12.g1 MSMg01no068_i12.g1 CHROMAT_FILE:
MSMg01no068_i12.g1 PHD_FILE: MSMg01no068_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:59 2005
         (192 letters)



>mm_chr11_118639778_118640369
          Length = 592

 Score =  325 bits (168), Expect = 1e-93
 Identities = 186/192 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttgtcaggcttgtgtggcaactacctttacccactgcgccatcttactgggcacctc 60
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 448 aggttgtcaggctcgtgtggcaaccacctttacccactgcgccatcttactgggcgcctc 389

                                                                       
Query: 61  tagcctctgactataatgctaaatgttaatttggaacctactctaatccaggacaatttt 120
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagcctctaactagaatgctaaatgttaatttggaacctactctaatccaggacaatttt 329

                                                                       
Query: 121 atcttctgagctctttgcctgagaaacacctgtggagatggctcagtgcttgctgtacaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 328 atcttctgagctctttgcctgagaaacacctggggagatggctcagtgcttgctgtacaa 269

                       
Query: 181 gcctgagggctg 192
           ||||||||||||
Sbjct: 268 gcctgagggctg 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)