BAC Information

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BAC

Clone NameMSMg01-068L13
Chromosome11 (Build37)
Map Location 12,205,354 - 12,353,875
singlet/doubletdoublet
Overlap geneCobl
Upstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068L13.T7 (MSMg01no068_l13.b1)MSMg01-068L13.TJ (MSMg01no068_l13.g1)
ACCAG293149AG293150
length710717
length of high quality
(start - end)
361 (67 - 427)399 (72 - 470)
definitionCHROMAT_FILE: MSMg01no068_l13.b1 PHD_FILE: MSMg01no068_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:15 2005CHROMAT_FILE: MSMg01no068_l13.g1 PHD_FILE: MSMg01no068_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,353,515 - 12,353,875)(12,205,354 - 12,205,752)
sequence
GCGGCGCTATACGACTCCTATATTTCCAGAATCCGCGGAATTCATAAATT
GCTCTCTCAGCAGATGTGATGAGCACAGCATTGGATGTGGGTCAGGAGAG
CTGAGCTACTGAGGTAGTACTTGGGTGAACAGGACAGGAGAGACTTGGGG
TGGATGGAGAAGCTCTAGACCCGTTTGTCTCCCTTGAGAAGTTTGGATAT
CACATTTGAGTGTGGACTACACCTTGTGTCAGATTAGTTATCATGGCCCG
GAGCTTAGTGCTCCTCTGCTAACAGAAGTGTCTGTTCCATGTTTCTTTTA
CTTCTGTGCTAGCAGTTGTCTGGCTCCATGAAGATGAAGTCCTTAACTAA
TCATCTGCCATTGTATATTCAATTAAAATGGGTATGGAACTCTATCTCTG
AGTGTAGTGTTTGTGTGACTCAGTCAGCAGTGTGTTCAGAAAAGAAACTA
TAAGAATATTGGGACGATTCACTTATAAATTAGTGTCTGAGTATTGGGTA
AAATGCTGTACATGTGTATAAGTCGCTCCAGAAGATATTTGCATGCGCCC
TGCGAGGAGCTGTACCAGTAGTTGAGCTAATCTATCGAACTGTTATATCT
ATTACATCTAATAGTCATTTATAGGTTGCCCTGTCTCTGCTTTGTTCTTG
TCTTGTTTTGTTTTGATTTGATTGAAATTCCTCTTGTCTGTAATGTCTTG
TCGCCCTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTGCCCAATTCTCAGGGCAGGATGGGATCTGTCTACA
GCCCTAGCCTGCCTGCTGGGTGTCATAAATATGTGGGCCTGCAGAAAGGC
AAGTTGGGGATATGGTTCAGGCCTTTACCTGGCTCTTCCACCCTTTGTAG
ACCACTACACTGCAGATCTTGTAGGTGTCTTCTCTTCATGAAGTGAGCTT
ACTGGGCTCACTCAGCAAATCCTATTCACTTGTCCCCACTAGGGAGGTGA
CACTGTGAGTGAGGATTAACAGTCTTATAGTTGGCCTCTGAAATCGCTAT
GTGCCTTGGTGTGAGGGGGCTCTTCAGAGATGCCACAATGGTTTAAGGTG
ACAAAACTAGCATTTTATTGATAGCTATCTAGTTGATTCTTCTTTAAAGA
TTTATTTATTTTTATTTTCATGTGTATTATCAGCTTCCTGCATGTATGTA
TGTGTACCATGCGCATGCCTGGTGCTCATGGAAGTCAGAATAACTTTATA
AGATGGTTGTGAGTCATGATGTAAGTGCTGGAAAAATAACCTAGGTCCTC
TGCTAGAGCAACGACTTGCTTTAATCACTTCCTCAGCTATTTCTATTTGA
ATCTTAATTACCTATACCTACAATTTGTTTGCGTGATCAAACATGCTTCA
TCACTCTTAGGATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_l13.b1 MSMg01no068_l13.b1 CHROMAT_FILE:
MSMg01no068_l13.b1 PHD_FILE: MSMg01no068_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:15 2005
         (361 letters)



>mm_chr11_12353315_12354075
          Length = 761

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgagcacagcattggatgtgggtcaggagagctgagctactgaggtagtacttgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgagcacagcattggatgtgggtcaggagagctgagctactgaggtagtacttgggt 502

                                                                       
Query: 61  gaacaggacaggagagacttggggtggatggagaagctctagacccgtttgtctcccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacaggacaggagagacttggggtggatggagaagctctagacccgtttgtctcccttg 442

                                                                       
Query: 121 agaagtttggatatcacatttgagtgtggactacaccttgtgtcagattagttatcatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagtttggatatcacatttgagtgtggactacaccttgtgtcagattagttatcatgg 382

                                                                       
Query: 181 cccggagcttagtgctcctctgctaacagaagtgtctgttccatgtttcttttacttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccggagcttagtgctcctctgctaacagaagtgtctgttccatgtttcttttacttctg 322

                                                                       
Query: 241 tgctagcagttgtctggctccatgaagatgaagtccttaactaatcatctgccattgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctagcagttgtctggctccatgaagatgaagtccttaactaatcatctgccattgtat 262

                                                                       
Query: 301 attcaattaaaatgggtatggaactctatctctgagtgtagtgtttgtgtgactcagtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaattaaaatgggtatggaactctatctctgagtgtagtgtttgtgtgactcagtca 202

            
Query: 361 g 361
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_l13.g1 MSMg01no068_l13.g1 CHROMAT_FILE:
MSMg01no068_l13.g1 PHD_FILE: MSMg01no068_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:15 2005
         (399 letters)



>mm_chr11_12205154_12205952
          Length = 799

 Score =  694 bits (359), Expect = 0.0
 Identities = 389/399 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcagggcaggatgggatctgtctacagccctagcctgcctgctgggtgtcataaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttctcagggcaggatgggatctgtctacagccctagcctgcctgctgggtgtcataagta 260

                                                                       
Query: 61  tgtgggcctgcagaaaggcaagttggggatatggttcaggcctttacctggctcttccac 120
           || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggtctgcagaaaggcaagttgaggatatggttcaggcctttacctggctcttccac 320

                                                                       
Query: 121 cctttgtagaccactacactgcagatcttgtaggtgtcttctcttcatgaagtgagctta 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttgtagaccactatactgcagatcttgtaggtgtcttctcttcatgaagtgagctta 380

                                                                       
Query: 181 ctgggctcactcagcaaatcctattcacttgtccccactagggaggtgacactgtgagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggctcactcagcaaatcctattcacttgtccccactagggaggtgacactgtgagtg 440

                                                                       
Query: 241 aggattaacagtcttatagttggcctctgaaatcgctatgtgccttggtgtgagggggct 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggattaacagtcatagagttggcctctgaaatcgctatgtgccttggtgtgagggggct 500

                                                                       
Query: 301 cttcagagatgccacaatggtttaaggtgacaaaactagcattttattgatagctatcta 360
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 501 cttcagagatgccacaatggtttgaggtgacaaagctagcattttattgatagctatcta 560

                                                  
Query: 361 gttgattcttctttaaagatttatttatttttattttca 399
           ||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gttgattcttctttaaagatttatttatttttactttca 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)