BAC Information

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BAC

Clone NameMSMg01-069J21
Chromosome11 (Build37)
Map Location 5,098,902 - 5,099,141
singlet/doubletsinglet
Overlap geneKremen1
Upstream geneTbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
Downstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J21.T7 (MSMg01no069_j21.b1)MSMg01-069J21.TJ (MSMg01no069_j21.g1)
ACCAG293833AG293834
length719790
length of high quality
(start - end)
238 (67 - 304)49 (71 - 119)
definitionCHROMAT_FILE: MSMg01no069_j21.b1 PHD_FILE: MSMg01no069_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:25 2005CHROMAT_FILE: MSMg01no069_j21.g1 PHD_FILE: MSMg01no069_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTCC
TCCCAATTTCCCATGCACTGTACTAAACAGTGAGCCATGCACTGAGCCAG
ACAAGCCCTGCCCTTCTCTTGTCTGCAATACAAGCCTGGTCTCCAAGTTG
TGTGCAGCATAAGGCCAGGCATCGCTCCCCTTCTGCAGGGTGAAGTGCAC
ACAGATGCTAGGACAGTACTGTGCATGTTTCCTATGGGTTACCAGTGTGA
GGAGGGAAGCCAGAAGCCCTGCCAAAGGCTATGACTGCCGAGAGCTTTGA
AGAGAAACGGTGCATTTTATTGTCTGGGACATGCTCTTCTCTGGTCAAGA
TAGTGTGGTTGGCTGCACAAATCCTCCCTGAGGCAACTGGTGCACTGAGT
ATGACTGCCATCTGAAATCTGGGCTAGAACTCTTCACACTGCTCCTTCAC
CTCTGAACGTCTCACCATGTAAATTATATTATATGCCTCTCCACCCCACC
AACGTTTGGCTGGGCATTCTAGTATGGTTTCCCAGATCTCACTTCTCATT
ACTCCGATGTGATACCCTACCACCCATATATGTCTATTACATTCTATTGC
TTGACTCTCAAGGTTAGACACCATTTTTTTAACCACCCATGGACCCATAC
TCTAGTGTCCCGCGTCTTTACCGCACCTCATTTTCTGAATTGTTTCCTTG
CTGCACGAATACCGGTTTG
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCCGAAAATCCAGCCAGGGCTACACAGAGAAACCCTGTCAAA
AAAAAAAAAACAAAAACAACCACCATACCAAACCAAAATAAAACACCACA
CATCACGCAAAAATAACACCTCTCTATATTCTCTATGCTCTCACATATAA
GTCTCAGAATTCAGTTAATGTTTCGGGGGGCAAAGTGCTTTGTTTCTATC
ATTTCGGAGCCTCTGGCTCCCTTATAAAGATCCCAGCTTAACACCAAGGG
TGGCTCAGTGTGTAAGGACCTCTACCTAGTTCTGTTATTATGTCGGGTAG
TGATTCCCAAGCAGCCACCCAGACACATTTTTTTTTTTCTCCCCCCCCCC
CCCCCTGATTATATACTCATCACATCCCATCACCATAGCTTTGTTCTTTA
TGAAAAAAAAACATCACTTTGTAGGACTAGGCGTGATTCTGTTAACTTTC
AGAGACAGAATTTTCACTCTGCCCTCCCACGAATCTATGTACTATATGCG
TCCCTCCACCCATGCTCCGCCTCGCATTTATTAATTCTCGCATTATCGTT
TGTATTGCACCGCCCTGTTTTTTCGAATATACTTTCCCCCCCCCTCCTTC
CCCCCACTATCTTTCACCTCTCCCATTATTTTTTTCCTCTTCTCTTCTCA
TTTATCCATATTCTCCTTTTCTTTTTCTCTTTACTATCTATCTTTTATCG
CCTAAATTCCCGCGCATTAAACTTTTCCCTATCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j21.b1 MSMg01no069_j21.b1 CHROMAT_FILE:
MSMg01no069_j21.b1 PHD_FILE: MSMg01no069_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:25 2005
         (238 letters)



>mm_chr11_5098702_5099341
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%), Gaps = 2/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtactaaacagtgagccatgcactgagccagac-aagccctgcccttctcttgtctg 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 actgtactaaacagtgagccatgcactgagccagacaaagccctgcccttctcttgtctg 381

                                                                       
Query: 60  c-aatacaagcctggtctccaagttgtgtgcagcataaggccaggcatcgctccccttct 118
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaatacaagcctggtctccaagttgtgtgcagcataaggccaggcatcgctccccttct 321

                                                                       
Query: 119 gcagggtgaagtgcacacagatgctaggacagtactgtgcatgtttcctatgggttacca 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcagggtgaagtgcacacagatgctaggacagtactgtgcatgtttcctatgggttacca 261

                                                                       
Query: 179 gtgtgaggagggaagccagaagccctgccaaaggctatgactgccgagagctttgaagag 238
           ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 260 gtgggaggagggaagccagaagccctgccaaaggctaggagtgccgagagctttgaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 640
Length adjustment: 9
Effective length of query: 229
Effective length of database: 631
Effective search space:   144499
Effective search space used:   144499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)