BAC Information

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BAC

Clone NameMSMg01-069K18
Chromosome11 (Build37)
Map Location 90,452,634 - 90,452,938
singlet/doubletsinglet
Overlap geneStxbp4
Upstream genePctp, Tmem100, LOC100039104, Mmd, Hlf
Downstream geneLOC100039267, Cox11, Tom1l1, LOC638903, EG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K18.T7 (MSMg01no069_k18.b1)MSMg01-069K18.TJ (MSMg01no069_k18.g1)
ACCAG293874AG293875
length702693
length of high quality
(start - end)
438 (43 - 480)294 (54 - 347)
definitionCHROMAT_FILE: MSMg01no069_k18.b1 PHD_FILE: MSMg01no069_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:29 2005CHROMAT_FILE: MSMg01no069_k18.g1 PHD_FILE: MSMg01no069_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGAGAGATCTCATCTCAAATAAGCTTCATAATTCTATCTTACTGAA
GCAGTGGGTCTTTAAGCCATTCTCGTGTTCCCAGCGGATGCACACATGTC
TACATGCACATGCAACCTTTATATTTTAATATGCCTTCACTAGCTCAATG
ACTCGGCTACTCCACATGGCTAACACATTCCCCCCAATATTCCTGAGTTA
ATACTTGTTAAATCTATATTTCATCTCTGCTACCCCAGACCCAATCTGGG
ATGTGGCCCCTGGGGCTGCTTAACAGACTCTTACATGGCTAGATGTTTTC
TCTCCTGCAGCTCTTAAGTCTGATCTCTCTGCTTCCTCATCATGGTGATT
CGGCCCTTCCTCCTCTCCTTCTCCCTTGCCCAAGAAATCTAAAAGTCCTG
TCTCTGTCCCTCTGCCAAGCCATTGGTCGCTGGTAGCAATTTCACCAATC
AAAGCCAACTGGGGGCAGGGGCCTTCAGCATCTTACAAGCAGACATGCCA
GTTCCCGTGCAATTAATTTAAATTAATACCCATAACATTATAATCAATCC
ACAACATCCCACCCTTTTGTTAATAAAAGAGGCCCTTTTCTCTCAGACAT
AAATTTGGCACAAACATACAGTTACGTTATTTACACAGTATGACATATTA
CT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTGAACCCTTCCAGGAGTAAGAAAGCCCAGTGTAAAACAGACACTA
AAGTCCTGTGCAATGTAATCAGGTATGTCCTGTCGCCAGGAAGGCATTTT
ACTGGCTACAAGCAGACAACACATCCTGAACATGTTCCACGGCAGGGGAT
GATACCAGACCATTAACATAGGAAACACAACCATGGGAGCCACCCACAGA
GTCTGTCCAACACATGATTTAAGAATTTTTCTCTTTATGCTACATCACAT
CAGAATTTACTTGCTTTGTTATTATTTTAAATATGCTTATTTTTTTTTTT
TTTCACCCCCGCCCCACTTAAGTTAGGCCTGGCTATAGTATTTAGGCCAC
ATTTTAAAATAAAAAAAAAAAGTCTGTCGGGGCGTCTTTTGTGCATTTGT
TTAAACATGCAATTTCATCAAAGAACTTTGTCAAGCTTCCCTCGATCTGT
GCACTACTGTCTCTTCTTTTGCCGAGACTGTAATTCTATCCTGTGGAGCC
ACCTTCTTATAATCTACTGCCATCGCCCCCTTCCAGCCTCAATCCTTGCA
TATAATTCTCTTTCATTACGCGTTTAATGCTGCCCCCATTCCCTTCCTAG
CATCCTGGTGTAGAGTTTCTTACATGTGTTAATTTAACTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k18.b1 MSMg01no069_k18.b1 CHROMAT_FILE:
MSMg01no069_k18.b1 PHD_FILE: MSMg01no069_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:29 2005
         (438 letters)



>mm_chr11_90452631_90453467
          Length = 837

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%), Gaps = 3/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgagagatctcatctcaaataagcttcataattctatcttactgaagcagtg 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaattcagtgagagagctgatctcaaataagcttcataattctatcttactgaagcagtg 249

                                                                       
Query: 65  ggtctttaagccattctcgtgttcccagc-ggatgcacacatgtctacatgcacatgcaa 123
           ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 248 ggtctttaagccattct-gtgttcccagcagg-tgcacacatgtctacatgcacatgcaa 191

                                                                       
Query: 124 cctttatattttaatatgccttcactagctcaatgactcggctactccacatggctaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cctttatattttaatatgccttcactagctcaatgactcggctactccacatggctaaca 131

                                                                       
Query: 184 cattccccccaatattcctgagttaatacttgttaaatctatatttcatctctgctaccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cattccccccaatattcctgagttaatacttgttaaatctatatttcatctctgctaccc 71

                                                                       
Query: 244 cagacccaatctgggatgtggcccctggggctgcttaacagactcttacatggctagatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70  cagacccaatctgggatgtggcccctggggctgcttaacagactcttacatggttagatg 11

                  
Query: 304 ttttctc 310
           |||||||
Sbjct: 10  ttttctc 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space:   355212
Effective search space used:   355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)