BAC Information

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BAC

Clone NameMSMg01-069P13
Chromosome11 (Build37)
Map Location 73,394,070 - 73,394,716
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1
Downstream geneOlfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P13.T7 (MSMg01no069_p13.b1)MSMg01-069P13.TJ (MSMg01no069_p13.g1)
ACCAG294103AG294104
length696704
length of high quality
(start - end)		654 (43 - 696)629 (74 - 702)
definitionCHROMAT_FILE: MSMg01no069_p13.b1 PHD_FILE: MSMg01no069_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:52 2005CHROMAT_FILE: MSMg01no069_p13.g1 PHD_FILE: MSMg01no069_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTTCGAGAGGATCCGCGGAAT
TCTCTGAATAACCTGACTCTGGTTTTGCAGCTGATGTTTCACTTTATAAA
TGGGCACTCAGGTGATATCAATAATGTGGTTAATGTGTTGCAGTATGGAT
CACAGTCTTTTGGACAGGATATCTGTTCAAATCTTTGTAATGTTTCAAAG
CTAAGGACATATTAAAAGAAAGCTCAAGGACTTCAGCATTGTCCCTACCC
TGAGGAGCTGTTATTATGTTGAAATGGAAAAAAAAGAATTGCCCATGAAA
TAATTGTAATAAACCACACTGCTACCAAAATGATTATCAATGAAACTGTG
GAATAGTTATTTCTACAATATGTCAAAATGTTGCAAAGTATAAAAATCAC
AAAGAATAATGTTGTACCTGAAAACTGCTAGCCATACTATCATAAAACTG
GAAATGTAATATCTGTAGTTTGAAGGACAGTAAGCTACCTCCTAGTAATT
TATCTAGAATGACTGAAGGTGTATTAAGGTTGCTGCTTCATACCCTGGGA
CCTTTATTAATTATAAGCAAAGAAAGAACATCCTTGGCAGTCAACCTCTT
CTTACATGTCTCTTTCTAGCAACTTCTGAACCCAAGGGGCTCTGCATCCC
AGAGGAGTCCAGATGCTATGCGACTCACCAAAGGTGTGGTAATTAA

GAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGAATTTAATGGAAATGTTGACACG
TCATACCCAAATTTATGGGACACAAGAAGAAAGTTCGTAGCACTAAATGC
CCTGGTAAAGAAATTGGAGGGATCTTACACTAATAACTTAACAGCATACC
TGAGAGCTCTAGAACAAAAAGAACCAAACTCACCCAAGAGAAGTAGAAAG
CAGGAAGTAGTCAAACACAGGGCCAAAATCAACCAAATAAAAACAAAGAA
AACAACACAAAGAATCAACAAAACCAAAAGCTGTTTCTTTGAAAGAATCA
ACACCTAGCCAAGCTAAATAAAGGGCCAAGAGTCAGTATCCAAATTAATA
AAATCAGAAATGAAAAGGGAGACATAACAACAGAAATGGTGGAAATTCCA
AAAAGTCATCAGATCCTATAAAAAAGCCTATACTCAACAAAACTGGAAAA
TCTAGATGAAATGGGTGGTTTTCTAGACAGATGCCATGTACCAAAGTTAA
ATAAAGAATAGGTAGACTATCTAAACAAGACCATATCACACAAGGAAATA
GAAGTCACTAAAAACCTCTCACCCAAAAATAGCTCAGGGCCAGATGGATT
TAGTGCAGAATTCTACCAGACCTTCAAAGAAGCCCTGATACCATTTTCCT
CAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p13.b1 MSMg01no069_p13.b1 CHROMAT_FILE:
MSMg01no069_p13.b1 PHD_FILE: MSMg01no069_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:52 2005
         (654 letters)



>mm_chr11_73393867_73394917
          Length = 1051

 Score = 1006 bits (520), Expect = 0.0
 Identities = 618/652 (94%), Gaps = 7/652 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgaataacctgactctggttttgcagctgatgtttcactttataaatgggc 63
           ||||||||||||| || |||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 204 ggaattctctgaaaaaactgactctggttttgcagctcatatttcactttataaatgagc 263

                                                                       
Query: 64  actcaggtgatatcaataatgtggttaatgtgttgcagtatggatcacagtcttttggac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcaggtgatatcaataatgtggttaatgtgttgcagtatggatcacagtcttttggac 323

                                                                       
Query: 124 aggatatctgttcaaatctttgtaatgtttcaaagctaaggacatattaaaagaaagctc 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggatatctgttcaaatatttgtaatgtttcaaagctaaggacatattaaaagaaagctc 383

                                                                       
Query: 184 aaggacttcagcattgtccctaccctgaggagctgttattatgttgaaatggaaaaaaaa 243
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||  
Sbjct: 384 aaggacttcagcattgcccctacactgaggagctgttattatgttgaaatggaaaaaa-- 441

                                                                       
Query: 244 gaattgcccatgaaataattgtaataaaccacactgctaccaaaatgattatcaatgaaa 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 -aattgcccatgaaataattgtaataaaccacactgctaccaaaatgattatcaatgaaa 500

                                                                       
Query: 304 ctgtggaatagttatttctacaatatgtcaaaatgttgcaaagtataaaaatcacaaaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtggaatagttatttctacaatatgtcaaaatgttgcaaagtataaaaatcacaaaga 560

                                                                       
Query: 364 ataatgttgtacctgaaaactgctagccatactatcataaaactggaaatgtaatatctg 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 561 ataatgttgtacctgaaaactgctagccatactattataaaactggaaatgcaatatctg 620

                                                                       
Query: 424 tagtttgaaggacagtaagctacctcctagtaatttatctagaatgactgaaggtgtatt 483
           ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||
Sbjct: 621 tagtttgaaggacagtaagctacttcctagtaatttatctaggatgactgaaagtgtatt 680

                                                                       
Query: 484 aag-gttgctgcttcataccctgggacctttattaattataagcaaagaaagaacatcct 542
           ||| ||| ||| |  ||||| || |||||||||| |||||||||| ||||||||||||||
Sbjct: 681 aagtgtt-ctgataaataccatgtgacctttattcattataagcacagaaagaacatcct 739

                                                                       
Query: 543 tggcagtcaacctcttcttacatgtctctttctagcaacttctgaacccaaggggctctg 602
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 cggcagtcaacctcttcttacatgtctctttctagcaacttctgaacccaaggtgctctg 799

                                                               
Query: 603 catcccagaggagtccagatgctatgcga-ctcaccaaaggtgtggtaatta 653
           ||||||||||||||||||||||| ||| | || || ||| |||| |||||||
Sbjct: 800 catcccagaggagtccagatgctgtgc-agcttactaaatgtgtagtaatta 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1051
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1041
Effective search space:   670404
Effective search space used:   670404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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