BAC Information

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BAC

Clone NameMSMg01-070F02
Chromosome11 (Build37)
Map Location 104,891,810 - 104,892,327
singlet/doubletsinglet
Overlap genenone
Upstream geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
Downstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070F02.T7 (MSMg01no070_f02.b1)MSMg01-070F02.TJ (MSMg01no070_f02.g1)
ACCAG294368AG294369
length691699
length of high quality
(start - end)
541 (40 - 580)369 (68 - 436)
definitionCHROMAT_FILE: MSMg01no070_f02.b1 PHD_FILE: MSMg01no070_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:20 2005CHROMAT_FILE: MSMg01no070_f02.g1 PHD_FILE: MSMg01no070_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTAAACGACTCCTATATTCAGAGGACCGCGGAATTCA
ATAGTTTCGCAACATTATTAACACCGACTTTTCCGCCTTAAGAAAGAGAG
AATAGAAGAAATTTGGTTTTATGTCAACAGAAAAAAAATGTGATAGCCTA
TGTCTATCAACCATATAATCAGGAGATGAAAAGTCACAGCACCATAAAGC
TCTTGAAGCGAGTAAACGGAATTGGTTGGGAATTCAGAAAAGGAAAGCTG
TCCCCTATCCGAGCTCTAGAGAACACTGTTACAACTGTCTCTGGGATGAG
TCTACTCTCAAGAGTAGGCGAGACTTACTTTCAGAGCAGTTGACAACTTA
GCCAATGCTTTCCTAATAGCATGGAAAGAGTTAAAATTGCTACAGACAGA
TGGGTAATTAATTATGCCAGATATTGCTATGTTTTCTGGTGCCTGCCCTA
CCAAATACAATAATGCAATTAGTACTGTTAGCAGAGAAAGAAGGGGTGTT
GTGACGTTTCTTCTCTCAGAACACTTCTCACTCACTCCTGAGAGTCCGCA
TCGAGTCTGCCAACACCATTTTTAAACACCATGTTGTCATCTGTAAGGTA
AAGGTCACATTGATTAGAGAAGTGAAAAGCCTAGAAGTTTCTGTTATCAA
TGTTATTAGTCATGTCCAGAGTTTACGGAAGCTCTCAAGGN
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTTTGGTTTTGTGATATTTTTGTGTGTATGT
TTTCTTGGGTGTAGTTGCCCTCTTTGTGTTGATTGACTAGTTTAGAAGAA
AGATATTATTTAAATTTGGTTTTGTAATGGGATGTCTTGGTTTCTCTATC
TGTGATGATTAAGAGTTTTGTAGTCTGGGCTGTGGTCTCTTGGGATCTGC
AAGACATCTGTCTAGGCTTTCAGAGTCTCTGTTGGGAAGTCAGGCATAAG
TCTGATAGATCTGCCTTTATATGTTACTTGGCTTTTTTCCCTTGCAGCTT
TTAATATTCTTTGTTCTCTACATTTAGTGTTTTTTGTTTTGTTTTGTTTT
GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTTTGCCGTTTATG
TGGTTGGTAGATTTCTTTTACTTGTTCACTCCATTTGACGTTTTGTATGG
CTCCTATATGGTTATAACCATCTTTGCTCTTTATTTTTCGTTTTTTTTCC
TTATATTGTCCTTAAATACTTTCTACTATTCTTATCCCTTTGCATTTCAC
TTTTTTTTTCCCTACTCCCCTACACTTTATCATGTTTTCTATTTCTTACT
TCTATTTTATTTCCCTTTCCCTCTTGAATTTCTTTATCTTCTCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_f02.b1 MSMg01no070_f02.b1 CHROMAT_FILE:
MSMg01no070_f02.b1 PHD_FILE: MSMg01no070_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:20 2005
         (541 letters)



>mm_chr11_104891521_104892462
          Length = 942

 Score =  891 bits (461), Expect = 0.0
 Identities = 510/541 (94%), Gaps = 26/541 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatagtttcg-caacattattaacaccgacttttccgccttaagaaagagaga 62
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaattcaatagtttcgtaaacattattaacaccgacttttccgccttaagaaagagaga 748

                                                                       
Query: 63  atagaagaaatttggttttatgtcaacagaaaaaaaatgtgatagcctatgtctatcaac 122
           |||||                      |||||||||||||||||||||||||||||||||
Sbjct: 747 ataga----------------------agaaaaaaaatgtgatagcctatgtctatcaac 710

                                                                       
Query: 123 c--atataatcaggagatgaaaagtcacagcaccataaagctcttgaagcgagtaaacgg 180
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 catatataatcaggagatgaaaagtcacagcaccataaagctcttgaagcgagtaaacgg 650

                                                                       
Query: 181 aattggttgggaattcagaaaaggaaagctgtcccctatccgagctctagagaacactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aattggttgggaattcagaaaaggaaagctgtcccctatccgagctctagagaacactgt 590

                                                                       
Query: 241 tacaactgtctctgggatgagtctactctcaagagtaggcgagacttactttcagagcag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 589 tacaactgtctctgggatgagtctactctcaagagtaggcgagacttactttcacagcag 530

                                                                       
Query: 301 ttgacaacttagccaatgctttcctaatagcatggaaagagttaaaattgctacagacag 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 529 ttgacaacttagccaatgctttcctaacagcatggaaagagttaaaattgctacagacag 470

                                                                       
Query: 361 atgggtaattaattatgccagatattgctatgttttctggtgcctgccctaccaaataca 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 469 atgggtaattaattatgccagatattgatatgttttctggtgcctgccctaccaaataca 410

                                                                       
Query: 421 ataatgcaattagtactgttagcagagaaagaaggggtgttgtgacgtttcttctctcag 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 409 ataatgcaattagtactgttagcagaaaaagaaggggtgttgtgacgtttcttctctcag 350

                                                                       
Query: 481 aacacttctcactcactcctgagagtccgcatcgagtctgccaacaccatttttaaacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 349 aacacttctcactcactcctgagagtccgcatcgagtctgccaacac-atttttaaacac 291

            
Query: 541 c 541
           |
Sbjct: 290 c 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space:   494892
Effective search space used:   494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)